SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_198516
Gene Symbol: GALNT18

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.11448888C>T COSM4593727 CAL27 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4294 acAGACTCCtctctg GGGAGUCU m7b (m7b->m6b) HPTA2_317_G976.1_11470429
hsa-miR-6758-5p acagactCCTCTCTg UAGAGAGG m7b Disrupted HPTA2_317_G976.1_11470429
hsa-miR-6856-5p acagactCCTCTCTg AAGAGAGG m7b Disrupted HPTA2_317_G976.1_11470429

Mutation Mutation ID Sample Name Cancer Type
chr11:g.11448887C>A COSM4018032 TCGA-CD-A4MG-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-143-3p cagacTCATCTCtgt UGAGAUGA m7b Created HPTA2_317_G976.1_11470429
hsa-miR-4294 cAGACTCCtctctgt GGGAGUCU m7b Disrupted HPTA2_317_G976.1_11470429
hsa-miR-4756-3p cagactcATCTCTGt CCAGAGAU m7b Created HPTA2_317_G976.1_11470429
hsa-miR-4770 cagacTCATCTCtgt UGAGAUGA m7b Created HPTA2_317_G976.1_11470429
hsa-miR-6088 cagacTCATCTCTgt AGAGAUGA m8a Created HPTA2_317_G976.1_11470429
hsa-miR-627-5p cAGACTCAtctctgt GUGAGUCU m7b Created HPTA2_317_G976.1_11470429
hsa-miR-6758-5p cagactCCTCTCTgt UAGAGAGG m7b Disrupted HPTA2_317_G976.1_11470429
hsa-miR-6856-5p cagactCCTCTCTgt AAGAGAGG m7b Disrupted HPTA2_317_G976.1_11470429

Mutation Mutation ID Sample Name Cancer Type
chr11:g.11448885C>T COSM228542 YUPROST [skin][neck][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6758-5p gactCCTCTCTgttt UAGAGAGG m7b Disrupted HPTA2_317_G976.1_11470429
hsa-miR-6856-5p gactCCTCTCTgttt AAGAGAGG m7b Disrupted HPTA2_317_G976.1_11470429

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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