SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_052848
Gene Symbol: CCDC97

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.41319737C>T COSM255392 SJMB031 [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][medullomyoblastoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-545-3p tctccaaTTTGCTGc UCAGCAAA m7b Created HPTA2_944_G2644.1_41825642

Mutation Mutation ID Sample Name Cancer Type
chr19:g.41319731C>T COSM712791 TCGA-43-5668-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4644 gcccgCTCTCCAact UGGAGAGA m7a Disrupted HPTA2_944_G2644.1_41825642
hsa-miR-4531 gcccgcTCTCCAact AUGGAGAA m6b Disrupted HPTA2_944_G2644.1_41825642
hsa-miR-4306 gcccgCTCTCCAact UGGAGAGA m7a Disrupted HPTA2_944_G2644.1_41825642
hsa-miR-3978 gcccgCTTTCCAact GUGGAAAG m7b Created HPTA2_944_G2644.1_41825642
hsa-miR-5192 gcccgCTCTCCaact AGGAGAGU m6b Disrupted HPTA2_944_G2644.1_41825642
hsa-miR-620 gcccgcTCTCCAact AUGGAGAU m6b Disrupted HPTA2_944_G2644.1_41825642
hsa-miR-185-5p gcccgCTCTCCAact UGGAGAGA m7a Disrupted HPTA2_944_G2644.1_41825642
hsa-miR-1270 gcccgcTCTCCAact CUGGAGAU m6b Disrupted HPTA2_944_G2644.1_41825642

Mutation Mutation ID Sample Name Cancer Type
chr19:g.41319728G>A COSM997008 TCGA-A5-A0GW-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4745-5p cttgCCCACTCtcca UGAGUGGG m7b Created HPTA2_944_G2644.1_41825642
hsa-miR-4693-3p cttgccCACTCTCca UGAGAGUG m7b Created HPTA2_944_G2644.1_41825642
hsa-miR-4481 cttgCCCACTCtcca GGAGUGGG m7b Created HPTA2_944_G2644.1_41825642
hsa-miR-5192 cttgcccACTCTCCa AGGAGAGU m7b Created HPTA2_944_G2644.1_41825642

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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