SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_018158
Gene Symbol: SLC4A1AP

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.27664440G>T COSM4790791 CHC097T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3940-3p cgggCCGGGCTtcta CAGCCCGG m7b Disrupted HPTA2_1050_G2878.1_27887297
hsa-miR-3177-3p cggGCCGTGCttcta UGCACGGC m7b Created HPTA2_1050_G2878.1_27887297

Mutation Mutation ID Sample Name Cancer Type
chr2:g.27664429G>A COSM263729 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6876-3p tgcGACAGCaacggg AGCUGUCU m6b Disrupted HPTA2_1050_G2878.1_27887297
hsa-miR-6755-3p tgcGACAACAacggg UGUUGUCA m7a Created HPTA2_1050_G2878.1_27887297
hsa-miR-626 tgcGACAGCaacggg AGCUGUCU m6b Disrupted HPTA2_1050_G2878.1_27887297

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser