SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_016148
Gene Symbol: SHANK1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.50699261T>A COSN5438924 RK156_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-892b tagttagAGCCAGTc CACUGGCU m7b Created HPTA2_957_G2675.1_51202511
hsa-miR-8057 tagttAGAGCCAgtc GUGGCUCU m7b Created HPTA2_957_G2675.1_51202511
hsa-miR-760 tagttAGAGCCagtc CGGCUCUG m6b Created HPTA2_957_G2675.1_51202511
hsa-miR-6822-3p tagtTAGAGCCagtc AGGCUCUA m7b Created HPTA2_957_G2675.1_51202511
hsa-miR-4637 tAGTTAGTgccagtc UACUAACU m7b Disrupted HPTA2_957_G2675.1_51202511
hsa-miR-149-5p tagttaGAGCCAGtc UCUGGCUC m7b Created HPTA2_957_G2675.1_51202511

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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