SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_012428
Gene Symbol: NPTN

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.73560205A>G COSN6279719 RK077_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548e-5p tagttaTGCTTTTtg CAAAAGCA m7b Created HHSJI_948_Peak33623|46|0.392|4|NM_017455|NPTN
hsa-miR-548n tagttaTACTTTTtg CAAAAGUA m7b Disrupted HHSJI_948_Peak33623|46|0.392|4|NM_017455|NPTN
hsa-miR-548l tagttATACTTTTtg AAAAGUAU m8a Disrupted HHSJI_948_Peak33623|46|0.392|4|NM_017455|NPTN
hsa-miR-4422 tagttATGCTTTTtg AAAAGCAU m8a Created HHSJI_948_Peak33623|46|0.392|4|NM_017455|NPTN

Mutation Mutation ID Sample Name Cancer Type
chr15:g.73560131C>G COSN8590331 2553_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4711-5p cggttCTGATGCggt UGCAUCAG m7b Created HHSJI_948_Peak33623|46|0.392|4|NM_017455|NPTN
hsa-miR-2115-3p cggTTCTGATGcggt CAUCAGAA m8a Created HHSJI_948_Peak33623|46|0.392|4|NM_017455|NPTN
hsa-miR-589-5p cGGTTCTCAtgcggt UGAGAACC m8a (m8a->m7a) HHSJI_948_Peak33623|46|0.392|4|NM_017455|NPTN

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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