SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_012248
Gene Symbol: SEPHS2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.30444111T>C COSN7304170 8061178 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-550a-3p aGTAAGACgaagcta UGUCUUAC m7b Created HHSJI_1043_Peak30773|12|0.1391|4|NM_012248|SEPHS2
hsa-miR-452-3p agtaAGATGAagcta CUCAUCUG m6b Disrupted HHSJI_1043_Peak30773|12|0.1391|4|NM_012248|SEPHS2
hsa-miR-200c-5p aGTAAGACGaagcta CGUCUUAC m8a (m7a->m8a) HHSJI_1043_Peak30773|12|0.1391|4|NM_012248|SEPHS2
hsa-miR-200b-5p aGTAAGATGaagcta CAUCUUAC m8a (m8a->m7a) HHSJI_1043_Peak30773|12|0.1391|4|NM_012248|SEPHS2
hsa-miR-200a-5p aGTAAGATGaagcta CAUCUUAC m8a (m8a->m7a) HHSJI_1043_Peak30773|12|0.1391|4|NM_012248|SEPHS2

Mutation Mutation ID Sample Name Cancer Type
chr16:g.30444065A>C COSN8497569 AOCS-155-3-5 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5680 gttgattCATTTCTg GAGAAAUG m7b Created HHSJI_1043_Peak30773|12|0.1391|4|NM_012248|SEPHS2
hsa-miR-3646 gttgaTTCATTTctg AAAAUGAA m7b Created HHSJI_1043_Peak30773|12|0.1391|4|NM_012248|SEPHS2
hsa-miR-15b-3p gtTGATTCatttctg CGAAUCAU m6b Created HHSJI_1043_Peak30773|12|0.1391|4|NM_012248|SEPHS2

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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