SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_012234
Gene Symbol: RYBP

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.72378525T>C COSN228601 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1185-5p atcgacATCCTCatc AGAGGAUA m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-1265 atcgACATCCTcatc CAGGAUGU m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-3605-5p atcgaCATCCTCAtc UGAGGAUG m8a Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-6804-5p atcgaCACCCTCAtc UGAGGGUG m8a Created HPRO7_2122_G3434.1_72427664

Mutation Mutation ID Sample Name Cancer Type
chr3:g.72378520A>T COSN9723707 C0017T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1255a catcCTCATCCacag AGGAUGAG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-1255b-5p catcCTCATCCacag CGGAUGAG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-3190-3p catcctCTTCCACAg UGUGGAAG m8a Created HPRO7_2122_G3434.1_72427664
hsa-miR-3605-5p CATCCTCAtccacag UGAGGAUG m8a Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-3691-5p catcctCATCCACag AGUGGAUG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-376b-5p catcctcATCCACag CGUGGAUA m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-376c-5p catcctcATCCACag GGUGGAUA m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-4752 catcctcATCCACAg UUGUGGAU m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-6077 catcCTCTTCCacag GGGAAGAG m7b Created HPRO7_2122_G3434.1_72427664
hsa-miR-6833-5p catcctcTTCCACAg GUGUGGAA m7b Created HPRO7_2122_G3434.1_72427664
hsa-miR-8056 catcctcATCCACag CGUGGAUU m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-1255a catcCTCATCCacag AGGAUGAG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-1255b-5p catcCTCATCCacag CGGAUGAG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-3190-3p catcctCTTCCACAg UGUGGAAG m8a Created HPRO7_2122_G3434.1_72427664
hsa-miR-3605-5p CATCCTCAtccacag UGAGGAUG m8a Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-3691-5p catcctCATCCACag AGUGGAUG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-376b-5p catcctcATCCACag CGUGGAUA m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-376c-5p catcctcATCCACag GGUGGAUA m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-4752 catcctcATCCACAg UUGUGGAU m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-6077 catcCTCTTCCacag GGGAAGAG m7b Created HPRO7_2122_G3434.1_72427664
hsa-miR-6833-5p catcctcTTCCACAg GUGUGGAA m7b Created HPRO7_2122_G3434.1_72427664
hsa-miR-8056 catcctcATCCACag CGUGGAUU m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-1255a catcCTCATCCacag AGGAUGAG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-1255b-5p catcCTCATCCacag CGGAUGAG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-3190-3p catcctCTTCCACAg UGUGGAAG m8a Created HPRO7_2122_G3434.1_72427664
hsa-miR-3605-5p CATCCTCAtccacag UGAGGAUG m8a Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-3691-5p catcctCATCCACag AGUGGAUG m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-376b-5p catcctcATCCACag CGUGGAUA m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-376c-5p catcctcATCCACag GGUGGAUA m6b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-4752 catcctcATCCACAg UUGUGGAU m7b Disrupted HPRO7_2122_G3434.1_72427664
hsa-miR-6077 catcCTCTTCCacag GGGAAGAG m7b Created HPRO7_2122_G3434.1_72427664
hsa-miR-6833-5p catcctcTTCCACAg GUGUGGAA m7b Created HPRO7_2122_G3434.1_72427664
hsa-miR-8056 catcctcATCCACag CGUGGAUU m6b Disrupted HPRO7_2122_G3434.1_72427664

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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