SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_006038
Gene Symbol: SPATA2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.49904860TTTG>G COSN1874956 RK023_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548c-3p agatATTTTTGagattta CAAAAAUC m7a Disrupted HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-616-5p agatatTTTTGAGattta ACUCAAAA m7b Disrupted HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-371a-5p agatattTTTGAGattta ACUCAAAC m6b Disrupted HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-216a-5p agatatTGAGATTta UAAUCUCA m7b Created HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-3613-3p agataTTTTTGagattta ACAAAAAA m6b Disrupted HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-371b-5p agatatTTTTGAGattta ACUCAAAA m7b Disrupted HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-372-5p agatattTTTGAGattta CCUCAAAU m6b Disrupted HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-373-5p agatatTTTTGAGattta ACUCAAAA m7b Disrupted HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-513c-5p agataTTGAGAttta UUCUCAAG m6b Created HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2
hsa-miR-514b-5p agataTTGAGAttta UUCUCAAG m6b Created HHSJI_1751_Peak12938|68|0.5468|4|NM_006038|SPATA2

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser