SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_004854
Gene Symbol: CHST10

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.100393466G>A COSM1168891 8035388 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-193a-5p acaccacAAGACCCt UGGGUCUU m7b Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-3677-3p acaCCACGAGaccct CUCGUGGG m7a Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-193a-5p acaccacAAGACCCt UGGGUCUU m7b Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-3677-3p acaCCACGAGaccct CUCGUGGG m7a Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747

Mutation Mutation ID Sample Name Cancer Type
chr2:g.100393452C>T COSM2979788 3N29-VS-3T29 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4691-5p TGGAGGACgatgccc GUCCUCCA m8a Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-4793-5p tggAGGATGatgccc ACAUCCUG m6b Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-5196-3p tgGAGGATGAtgccc UCAUCCUC m8a Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-4691-5p TGGAGGACgatgccc GUCCUCCA m8a Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-4793-5p tggAGGATGatgccc ACAUCCUG m6b Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-5196-3p tgGAGGATGAtgccc UCAUCCUC m8a Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747

Mutation Mutation ID Sample Name Cancer Type
chr2:g.100393446C>T COSM4415465 SNUH_G73_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3675-5p acgatGCCCCATAca UAUGGGGC m8a Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-486-3p acgaTGCCCCataca CGGGGCAG m6b Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-6081 acgaTGCTCCataca AGGAGCAG m6b Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-6874-5p acgatGCTCCATaca AUGGAGCU m7a Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-6890-5p acgatgCCCCATaca CAUGGGGU m6b Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-3675-5p acgatGCCCCATAca UAUGGGGC m8a Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-486-3p acgaTGCCCCataca CGGGGCAG m6b Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-6081 acgaTGCTCCataca AGGAGCAG m6b Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-6874-5p acgatGCTCCATaca AUGGAGCU m7a Created HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747
hsa-miR-6890-5p acgatgCCCCATaca CAUGGGGU m6b Disrupted HHHNH_758_CHST10|NM_004854|exon_CDS|-4.22913193295546|0.18646702053747

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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