SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_004638
Gene Symbol: PRRC2A

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31636602C>T COSM3624635 TCGA-D9-A149-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1285-3p ctccTGCCCAGcagg UCUGGGCA m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-3187-5p ctccTGCCCAGcagg CCUGGGCA m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-3692-5p ctcctgcCCAGCAGg CCUGCUGG m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-4468 ctcCTGCTCagcagg AGAGCAGA m6b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-4486 ctcctGCCCAGCagg GCUGGGCG m7a Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-4663 ctcctGCTCAGCagg AGCUGAGC m7b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-4690-5p ctCCTGCTCagcagg GAGCAGGC m7a (m6a->m7a) HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-4722-5p CTCCTGCCcagcagg GGCAGGAG m8a Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-5189-5p ctccTGCCCAGcagg UCUGGGCA m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-5589-5p ctcctgCCCAGCagg GGCUGGGU m6b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-612 ctccTGCCCAGCagg GCUGGGCA m8a Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-6165 cTCCTGCTcagcagg CAGCAGGA m7b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-6721-5p ctCCTGCCCAgcagg UGGGCAGG m8a Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-6860 ctccTGCCCAGcagg ACUGGGCA m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-8077 ctcctgCTCAGCagg GGCUGAGU m6b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-93-3p ctcctgcTCAGCAGg ACUGCUGA m7b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31636555C>T COSM4160841 PTC-7C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2467-3p tactCCTCTGCagcc AGCAGAGG m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-3158-5p tactccTCTGCAGcc CCUGCAGA m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-3678-3p tactcCTCTGCAGcc CUGCAGAG m8a Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-518a-5p tactcCTTTGCAGcc CUGCAAAG m8a Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-527 tactcCTTTGCAGcc CUGCAAAG m8a Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-6847-5p tacTCCTCTGcagcc ACAGAGGA m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31636554T>A COSM4160840 PTC-7C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-17-3p ctactccACTGCAGc ACUGCAGU m7b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-2467-3p ctactCCTCTGCagc AGCAGAGG m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-3158-5p ctactccTCTGCAGc CCUGCAGA m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-3678-3p ctactcCTCTGCAGc CUGCAGAG m8a Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-5693 ctactCCACTGCagc GCAGUGGC m7a Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-6499-3p ctactcCACTGCagc AGCAGUGU m6b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-6847-5p ctacTCCTCTGcagc ACAGAGGA m7b Disrupted HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31636550C>T COSM4160839 PTC-7C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3125 tattctaTTCCTCTg UAGAGGAA m7b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-3916 tattctaTTCCTCTg AAGAGGAA m7b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-6859-5p tattctaTTCCTCTg GAGAGGAA m7b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31636548T>A COSM4160838 PTC-7C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-219a-1-3p tttatTCAACTCctc AGAGUUGA m7b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683
hsa-miR-5585-3p ttTATTCAactcctc CUGAAUAG m6b Created HHHSH_2914_PRRC2A|NM_004638-1|exon_CDS|-7.0295875659816|-0.0222128781435683

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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