SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_003685
Gene Symbol: KHSRP

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.6416449G>A COSN7451488 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1298-3p acagCCCAGATccca CAUCUGGG m7b Created HPKMB_4174_G4743.1_6416461
hsa-miR-1587 aCAGCCCAgatccca UUGGGCUG m7b Created HPKMB_4174_G4743.1_6416461
hsa-miR-3187-5p acaGCCCAGatccca CCUGGGCA m6b Created HPKMB_4174_G4743.1_6416461
hsa-miR-3620-5p aCAGCCCAgatccca GUGGGCUG m7b Created HPKMB_4174_G4743.1_6416461
hsa-miR-378g acAGCCCAGatccca ACUGGGCU m7b (m6b->m7b) HPKMB_4174_G4743.1_6416461
hsa-miR-4486 acaGCCCAGatccca GCUGGGCG m6b Created HPKMB_4174_G4743.1_6416461
hsa-miR-6860 acaGCCCAGatccca ACUGGGCA m6b Created HPKMB_4174_G4743.1_6416461
hsa-miR-612 acaGCCCAGatccca GCUGGGCA m6b Created HPKMB_4174_G4743.1_6416461
hsa-miR-4713-3p acagcccGGATCCCa UGGGAUCC m7b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-4674 acAGCCCAGatccca CUGGGCUC m7a (m6a->m7a) HPKMB_4174_G4743.1_6416461
hsa-miR-4741 ACAGCCCGgatccca CGGGCUGU m8a Disrupted HPKMB_4174_G4743.1_6416461

Mutation Mutation ID Sample Name Cancer Type
chr19:g.6416444C>G COSN8606686 J73_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6829-5p ccggatcGCAGCCCa UGGGCUGC m7b Created HPKMB_4174_G4743.1_6416461
hsa-miR-762 ccggatcCCAGCCCa GGGGCUGG m7b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-769-3p ccgGATCCCAGccca CUGGGAUC m8a Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-6506-5p ccggATCCCAGccca ACUGGGAU m7b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-4505 ccggatCCCAGCCca AGGCUGGG m7b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-4498 ccggatcCCAGCCCa UGGGCUGG m7b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-4492 ccggatcCCAGCCCa GGGGCUGG m7b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-450b-3p ccgGATCCCAgccca UUGGGAUC m7b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-638 ccgGATCCCagccca AGGGAUCG m6b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-619-5p ccggATCCCAGCcca GCUGGGAU m8a Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-604 ccggatCGCAGCCca AGGCUGCG m7b Created HPKMB_4174_G4743.1_6416461
hsa-miR-5787 ccggatCCCAGCCCa GGGCUGGG m8a Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-5001-5p ccggatcCCAGCCCa AGGGCUGG m7b Disrupted HPKMB_4174_G4743.1_6416461
hsa-miR-4713-3p ccGGATCCCAgccca UGGGAUCC m8a Disrupted HPKMB_4174_G4743.1_6416461

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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