SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_003529
Gene Symbol: HIST1H3A
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.26020725T>G COSM420963 TCGA-DK-A1A7-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1910-5p cAGGACTGtaaaaca CCAGUCCU m7b Created HHHNH_1494_HIST1H3A|NM_003529|exon_CDS|-4.06842750323629|0.318293250226758
hsa-miR-2681-5p caggactGTAAAACa GUUUUACC m7a Created HHHNH_1494_HIST1H3A|NM_003529|exon_CDS|-4.06842750323629|0.318293250226758
hsa-miR-582-5p caggACTGTAAaaca UUACAGUU m7a Created HHHNH_1494_HIST1H3A|NM_003529|exon_CDS|-4.06842750323629|0.318293250226758
hsa-miR-6507-3p caGGACTTTaaaaca CAAAGUCC m7b (m7b->m6b) HHHNH_1494_HIST1H3A|NM_003529|exon_CDS|-4.06842750323629|0.318293250226758
hsa-miR-6838-3p CAGGACTTtaaaaca AAGUCCUG m8a Disrupted HHHNH_1494_HIST1H3A|NM_003529|exon_CDS|-4.06842750323629|0.318293250226758

Mutation Mutation ID Sample Name Cancer Type
chr6:g.26020614A>G COSM123590 HN_62298 [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4321 cACCGCTAccggccg UUAGCGGU m7b Disrupted HHHNH_1493_HIST1H3A|NM_003529|exon_CDS|-3.90815249696503|-0.271592088681683
hsa-miR-885-3p cacCGCTGCCggccg AGGCAGCG m7b Created HHHNH_1493_HIST1H3A|NM_003529|exon_CDS|-3.90815249696503|-0.271592088681683

Mutation Mutation ID Sample Name Cancer Type
chr6:g.26020591C>T COSM1319124 TCGA-AB-2854-03 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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