SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_003112
Gene Symbol: SP4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr7:g.21511258G>T COSM4996825 NPC39F [upper_aerodigestive_tract][pharynx][carcinoma][nasopharyngeal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6875-3p caacatGGAAGAATt AUUCUUCC m8a Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-4666a-5p caACATGTAagaatt AUACAUGU m7b (m6b->m7b) HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-4716-5p cAACATGGAagaatt UCCAUGUU m8a (m8a->m7a) HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-600 caacaTGTAAGaatt ACUUACAG m6b Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4

Mutation Mutation ID Sample Name Cancer Type
chr7:g.21511254C>T COSM452837 TCGA-A2-A0T0-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1279 caacCAATATGgaag UCAUAUUG m7b Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-4716-5p caaccAACATGGAag UCCAUGUU m8a Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-4781-3p caaCCAACATggaag AAUGUUGG m7b Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-587 caaccaaTATGGAAg UUUCCAUA m7b Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4

Mutation Mutation ID Sample Name Cancer Type
chr7:g.21511253A>G COSM2153912 TCGA-12-0688 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6872-3p tcaaccaGCATGGaa CCCAUGCC m6b Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-6131 tcaACCAGCatggaa GGCUGGUC m6b Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-5581-3p tcaaccaGCATGGAa UUCCAUGC m7b Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-4781-3p tcaaCCAACATggaa AAUGUUGG m7b Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-133a-5p tcaACCAGCatggaa AGCUGGUA m6b Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-138-5p tcaACCAGCatggaa AGCUGGUG m6b Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-29b-1-5p tcAACCAGCatggaa GCUGGUUU m7a (m6a->m7a) HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-4716-5p tcaaccAACATGGAa UCCAUGUU m8a Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4

Mutation Mutation ID Sample Name Cancer Type
chr7:g.21511250C>A COSM745515 TCGA-18-3416-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-380-5p gttTCAACCAacatg UGGUUGAC m7a Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-4781-3p gtttcaaCCAACATg AAUGUUGG m7b Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-563 gttTCAACCaacatg AGGUUGAC m6b Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4

Mutation Mutation ID Sample Name Cancer Type
chr7:g.21511248A>G COSM3880091 TCGA-CG-4474-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-380-5p atgttTCAACCAaca UGGUUGAC m7a Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-412-5p atgttTCGACCAaca UGGUCGAC m7a Created HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-494-3p ATGTTTCAaccaaca UGAAACAU m8a Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-510-3p atGTTTCAAccaaca AUUGAAAC m7b (m7b->m6b) HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4
hsa-miR-563 atgttTCAACCaaca AGGUUGAC m6b Disrupted HHSJI_2403_Peak10301|11|0.12|4|NM_003112|SP4

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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