SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_002623
Gene Symbol: PFDN4

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr20:g.54214400A>C COSM1412581 TCGA-BR-4280-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr20:g.54214389A>C COSM1412580 TCGA-AZ-4315-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-653-5p aTCAACACaagataa GUGUUGAA m7a Created HHHNH_2758_PFDN4|NM_002623|exon_CDS|-6.4687383842539|0.782209446598583
hsa-miR-581 atcaACACAAGAtaa UCUUGUGU m8a Created HHHNH_2758_PFDN4|NM_002623|exon_CDS|-6.4687383842539|0.782209446598583

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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