SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001810
Gene Symbol: CENPB

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.3784933G>A COSM1411755 TCGA-G4-6588-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-877-3p agGAAGAGGAcgatg UCCUCUUC m8a Disrupted HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-6881-3p aggAAGAGGAcgatg AUCCUCUU m7b Disrupted HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-6875-3p aGGAAGAAgacgatg AUUCUUCC m7b Created HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-6852-3p aggaAGAGGACgatg UGUCCUCU m7b Disrupted HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-6740-3p aggaAGAAGACgatg UGUCUUCU m7b Created HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-4778-3p agGAAGAAGAcgatg UCUUCUUC m8a Created HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-3909 aggaAGAGGACgatg UGUCCUCU m7b Disrupted HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-1236-3p aGGAAGAGGacgatg CCUCUUCC m8a (m8a->m7a) HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835

Mutation Mutation ID Sample Name Cancer Type
chr20:g.3784927T>C COSM4634528 HCT8 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1238-3p aggacgaCGAGGAAg CUUCCUCG m7b Created HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-6891-3p aggacGATGAGGaag CCCUCAUC m7b Disrupted HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-670-3p aggacgaTGAGGAAg UUUCCUCA m7b Disrupted HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835
hsa-miR-6072 aggacGATGAGGAag UCCUCAUC m8a Disrupted HHHNH_723_CENPB|NM_001810|exon_CDS|-2.29399701038495|-0.3871527140835

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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