SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001514
Gene Symbol: GTF2B
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.88860151C>A COSM1344710 TCGA-AA-3496-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7b-5p tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-let-7c-5p tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-let-7d-5p tCTACCTCgaaatat AGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-let-7e-5p tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-let-7f-5p tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-let-7g-5p tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-let-7i-5p tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-let-7a-5p tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-miR-331-5p tcTACCTAGaaatat CUAGGUAU m7a (m6a->m7a) HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-miR-4458 tCTACCTCgaaatat AGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-miR-4500 tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-miR-98-5p tCTACCTCgaaatat UGAGGUAG m7b Disrupted HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646

Mutation Mutation ID Sample Name Cancer Type
chr1:g.88860150G>T COSM1344709 TCGA-AA-3713-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-877-5p ctaCCTCTAaatata GUAGAGGA m6b Created HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-miR-202-3p cTACCTCTaaatata AGAGGUAU m7a Created HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-miR-6866-5p ctaCCTCTAAatata UUAGAGGC m7a Created HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646

Mutation Mutation ID Sample Name Cancer Type
chr1:g.88860150G>A COSM32382 Mx41 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1304-5p ctaCCTCAAAatata UUUGAGGC m7a Created HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646
hsa-miR-8055 ctacCTCAAAatata CUUUGAGC m6b Created HHHNH_1409_GTF2B|NM_001514|exon_CDS|-4.80642571343558|1.33545171442646

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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