SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001297622
Gene Symbol: HNRNPR

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.23310671G>T COSM1501693 TCGA-95-7039-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4740-3p ggaTCTCGGGgcaat GCCCGAGA m7b Disrupted HPKMB_548_G614.1_23637168
hsa-miR-4756-3p ggATCTCTGGgcaat CCAGAGAU m8a Created HPKMB_548_G614.1_23637168
hsa-miR-4740-3p ggaTCTCGGGgcaat GCCCGAGA m7b Disrupted HPKMB_548_G614.1_23637168
hsa-miR-4756-3p ggATCTCTGGgcaat CCAGAGAU m8a Created HPKMB_548_G614.1_23637168

Mutation Mutation ID Sample Name Cancer Type
chr1:g.23310671G>A COSM680036 TCGA-33-4566-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-125a-5p ggatCTCAGGGcaat UCCCUGAG m7b Created HPKMB_548_G614.1_23637168
hsa-miR-125b-5p ggatCTCAGGGcaat UCCCUGAG m7b Created HPKMB_548_G614.1_23637168
hsa-miR-146b-3p ggatctCAGGGCAat UGCCCUGU m7a Created HPKMB_548_G614.1_23637168
hsa-miR-3157-3p ggatctcAGGGCAat CUGCCCUA m6b Created HPKMB_548_G614.1_23637168
hsa-miR-3173-5p ggatctCAGGGCAat UGCCCUGC m7a Created HPKMB_548_G614.1_23637168
hsa-miR-345-3p ggatcTCAGGGCaat GCCCUGAA m7a Created HPKMB_548_G614.1_23637168
hsa-miR-4319 ggatCTCAGGGcaat UCCCUGAG m7b Created HPKMB_548_G614.1_23637168
hsa-miR-4324 ggaTCTCAGGGcaat CCCUGAGA m8a Created HPKMB_548_G614.1_23637168
hsa-miR-4732-3p ggatcTCAGGGCaat GCCCUGAC m7a Created HPKMB_548_G614.1_23637168
hsa-miR-4740-3p ggaTCTCGGGgcaat GCCCGAGA m7b Disrupted HPKMB_548_G614.1_23637168
hsa-miR-6799-3p ggatctCAGGGCAat UGCCCUGC m7a Created HPKMB_548_G614.1_23637168
hsa-miR-7976 ggatcTCAGGGCAat UGCCCUGA m8a Created HPKMB_548_G614.1_23637168
hsa-miR-874-3p ggatctCAGGGCAat CUGCCCUG m7b Created HPKMB_548_G614.1_23637168
hsa-miR-125a-5p ggatCTCAGGGcaat UCCCUGAG m7b Created HPKMB_548_G614.1_23637168
hsa-miR-125b-5p ggatCTCAGGGcaat UCCCUGAG m7b Created HPKMB_548_G614.1_23637168
hsa-miR-146b-3p ggatctCAGGGCAat UGCCCUGU m7a Created HPKMB_548_G614.1_23637168
hsa-miR-3157-3p ggatctcAGGGCAat CUGCCCUA m6b Created HPKMB_548_G614.1_23637168
hsa-miR-3173-5p ggatctCAGGGCAat UGCCCUGC m7a Created HPKMB_548_G614.1_23637168
hsa-miR-345-3p ggatcTCAGGGCaat GCCCUGAA m7a Created HPKMB_548_G614.1_23637168
hsa-miR-4319 ggatCTCAGGGcaat UCCCUGAG m7b Created HPKMB_548_G614.1_23637168
hsa-miR-4324 ggaTCTCAGGGcaat CCCUGAGA m8a Created HPKMB_548_G614.1_23637168
hsa-miR-4732-3p ggatcTCAGGGCaat GCCCUGAC m7a Created HPKMB_548_G614.1_23637168
hsa-miR-4740-3p ggaTCTCGGGgcaat GCCCGAGA m7b Disrupted HPKMB_548_G614.1_23637168
hsa-miR-6799-3p ggatctCAGGGCAat UGCCCUGC m7a Created HPKMB_548_G614.1_23637168
hsa-miR-7976 ggatcTCAGGGCAat UGCCCUGA m8a Created HPKMB_548_G614.1_23637168
hsa-miR-874-3p ggatctCAGGGCAat CUGCCCUG m7b Created HPKMB_548_G614.1_23637168

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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