SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001294
Gene Symbol: CLPTM1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.44993025G>A COSN9850970 C0041T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1304-5p cGCCTCAAgtcaggg UUUGAGGC m7b Created HHHNH_783_CLPTM1|NM_001294|exon_utr3|-6.5062459416168|1.13680982931182
hsa-miR-544b cgCCTCAGGTcaggg ACCUGAGG m8a Disrupted HHHNH_783_CLPTM1|NM_001294|exon_utr3|-6.5062459416168|1.13680982931182
hsa-miR-631 cgcctCAGGTCaggg AGACCUGG m6b Disrupted HHHNH_783_CLPTM1|NM_001294|exon_utr3|-6.5062459416168|1.13680982931182

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44991272C>T COSM3103613 pfg143T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6077 CTCTTCCCgctcctg GGGAAGAG m8a Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-6081 ctcttcCTGCTCCTg AGGAGCAG m8a Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-6165 ctctTCCTGCTcctg CAGCAGGA m7b Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-6077 CTCTTCCCgctcctg GGGAAGAG m8a Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-6081 ctcttcCTGCTCCTg AGGAGCAG m8a Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-6165 ctctTCCTGCTcctg CAGCAGGA m7b Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44991267C>G COSM1481214 TCGA-EW-A1PB-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4661-3p GGATCCTGttcccgc CAGGAUCC m8a Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-6077 ggatcCTCTTCCCgc GGGAAGAG m8a Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-4661-3p GGATCCTGttcccgc CAGGAUCC m8a Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-6077 ggatcCTCTTCCCgc GGGAAGAG m8a Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44991257C>T COSM3535835 TCGA-EE-A29V-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4436a taccTGTCCTGgatc GCAGGACA m7b Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-4773 tacCTGTTCTGgatc CAGAACAG m8a Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-5000-3p taccTGTCCTGgatc UCAGGACA m7b Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-589-3p taccTGTTCTGgatc UCAGAACA m7b Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-665 tacctgTCCTGGatc ACCAGGAG m6b Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-4436a taccTGTCCTGgatc GCAGGACA m7b Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-4773 tacCTGTTCTGgatc CAGAACAG m8a Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-5000-3p taccTGTCCTGgatc UCAGGACA m7b Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-589-3p taccTGTTCTGgatc UCAGAACA m7b Created HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151
hsa-miR-665 tacctgTCCTGGatc ACCAGGAG m6b Disrupted HHHNH_781_CLPTM1|NM_001294|exon_CDS|-6.56438512604849|1.2807400076151

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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