SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001290259
Gene Symbol: PHF3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.63712320A>G COSM3160324 TCGA-GV-A40E-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4724-5p tttatcaGTTCAGTc AACUGAAC m7b Created HPHES_7107_G9465.1_64422209
hsa-miR-4680-3p tttatcAATTCAGtc UCUGAAUU m7b Disrupted HPHES_7107_G9465.1_64422209
hsa-miR-4539 tttatcAGTTCAGtc GCUGAACU m7b Created HPHES_7107_G9465.1_64422209
hsa-miR-219b-3p tttatCAATTCagtc AGAAUUGC m6b Disrupted HPHES_7107_G9465.1_64422209
hsa-miR-219a-2-3p tttatCAATTCagtc AGAAUUGU m6b Disrupted HPHES_7107_G9465.1_64422209
hsa-miR-203b-3p tttatCAGTTCAgtc UUGAACUG m7b Created HPHES_7107_G9465.1_64422209

Mutation Mutation ID Sample Name Cancer Type
chr6:g.63712306T>A COSM1672542 T1154 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2053 gcatttTTAACAaat GUGUUAAU m6b Disrupted HPHES_7107_G9465.1_64422209

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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