SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001289999
Gene Symbol: NFIL3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.91410398G>A COSM1111024 LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4694-5p agaaAACACCacttt AGGUGUUA m6b Created HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201

Mutation Mutation ID Sample Name Cancer Type
chr9:g.91410391ACTTT>T COSM391516 LUAD-D01751 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-519d-3p aaacgcCACTTTaaaagct CAAAGUGC m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-4796-3p aaacgCCACTTTAaaagct UAAAGUGG m8a Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-3609 aaacgcCACTTTaaaagct CAAAGUGA m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-20b-5p aaacgcCACTTTaaaagct CAAAGUGC m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-20a-5p aaacgcCACTTTAaaagct UAAAGUGC m7a Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-17-5p aaacgcCACTTTaaaagct CAAAGUGC m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-93-5p aaacgcCACTTTaaaagct CAAAGUGC m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-548ah-5p aaacgcCACTTTaaaagct AAAAGUGA m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-526b-3p aaacgcCACTTTaaaagct GAAAGUGC m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-106b-5p aaacgcCACTTTAaaagct UAAAGUGC m7a Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-106a-5p aaacgcCACTTTaaaagct AAAAGUGC m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201

Mutation Mutation ID Sample Name Cancer Type
chr9:g.91410383G>C COSM4389996 TCGA-BT-A42B-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-208a-5p AAAAGCTCagctgct GAGCUUUU m8a Created HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-27b-5p aaAAGCTCagctgct AGAGCUUA m6b Created HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-4660 aaaagctGAGCTGCt UGCAGCUC m7b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-6854-5p aaaagCTGAGCTgct AAGCUCAG m7b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-6787-3p aaaAGCTGAGctgct UCUCAGCU m7b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-4663 aaaaGCTCAGCTgct AGCUGAGC m8a Created HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201

Mutation Mutation ID Sample Name Cancer Type
chr9:g.91410373C>T COSM3659467 TCGA-GN-A266-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3591-5p ctgctttCACTAAAa UUUAGUGU m7a Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-3606-5p ctgctTTCACTAAaa UUAGUGAA m8a Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-4422 cTGCTTTTactaaaa AAAAGCAU m7a Created HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-6835-3p cTGCTTTTactaaaa AAAAGCAC m7a Created HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201
hsa-miR-921 ctgcttTCACTAaaa CUAGUGAG m6b Disrupted HHHNH_2520_NFIL3|NM_005384|exon_CDS|-5.76915471513776|-0.119075025613201

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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