SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001288760
Gene Symbol: ZNF180

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477129A>C COSM1394470 TCGA-AA-3510-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-595 agctatACACTTatt GAAGUGUG m6b Created HPTK7_4070_G5886.1_44981342

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477123T>C COSM4581185 CHEWS036 [bone][humerus][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-143-5p aaacttACTGCACat GGUGCAGU m7b Created HPTK7_4070_G5886.1_44981342

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477064T>C COSM1612386 BN17 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1252-3p tgggaaaTCATTTat CAAAUGAG m6b Disrupted HPTK7_4069_G5885.2_44981290
hsa-miR-224-3p tgggaaACCATTTat AAAAUGGU m7b Created HPTK7_4069_G5885.2_44981290
hsa-miR-29b-2-5p tggGAAACCAtttat CUGGUUUC m7b Created HPTK7_4069_G5885.2_44981290
hsa-miR-3646 tgggaaaTCATTTat AAAAUGAA m6b Disrupted HPTK7_4069_G5885.2_44981290
hsa-miR-4694-3p tgggaaaCCATTTat CAAAUGGA m6b Created HPTK7_4069_G5885.2_44981290
hsa-miR-522-3p tgggaaACCATTTat AAAAUGGU m7b Created HPTK7_4069_G5885.2_44981290
hsa-miR-580-5p tgggaAATCATTtat UAAUGAUU m7b Disrupted HPTK7_4069_G5885.2_44981290

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477048A>G COSM1612385 BN17 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7705 caGAGCTATaaactt AAUAGCUC m7b (m7b->m6b) HPTK7_4068_G5885.1_44981259

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477034C>A COSM1289073 TARGET-30-PASCDX [autonomic_ganglia][NS][neuroblastoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-450b-5p taTTGCAAAtcaaag UUUUGCAA m7b (m6b->m7b) HPTK7_4068_G5885.1_44981259

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44476990G>T COSM4975636 1N43-VS-1T43 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-580-5p gcAATCATTgtggga UAAUGAUU m7b (m6b->m7b) HPTK7_4067_G5884.1_44981207
Mutation Mutation ID Sample Name Cancer Type
chr19:g.44476990G>A COSM264869 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr19:g.44476978C>T COSM3535603 TCGA-EE-A2MS-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3167 gGAAATCCTttagtc AGGAUUUC m8a (m8a->m7a) HPTK7_4067_G5884.1_44981207
hsa-miR-4509 ggaaatCCTTTAGTc ACUAAAGG m8a Disrupted HPTK7_4067_G5884.1_44981207
hsa-miR-541-5p ggaAATCCTTTagtc AAAGGAUU m8a Disrupted HPTK7_4067_G5884.1_44981207
hsa-miR-876-5p gGAAATCCtttagtc UGGAUUUC m7b Disrupted HPTK7_4067_G5884.1_44981207

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44476907A>C COSM1233644 587376 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3920 tgTAATCAGTgtggg ACUGAUUA m8a Disrupted HPTK7_4066_G5883.1_44981137

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44476898A>C COSM190641 TCGA-AA-3984-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1265 tgtgggACATCCTtc CAGGAUGU m7b Created HPTK7_4066_G5883.1_44981137
hsa-miR-219b-5p tgtgGGACATCcttc AGAUGUCC m7b Created HPTK7_4066_G5883.1_44981137
hsa-miR-3167 tgtggGAAATCCTtc AGGAUUUC m8a Disrupted HPTK7_4066_G5883.1_44981137
hsa-miR-4433a-5p tGTGGGACatccttc CGUCCCAC m7b Created HPTK7_4066_G5883.1_44981137
hsa-miR-4433b-5p tgTGGGACATccttc AUGUCCCA m8a Created HPTK7_4066_G5883.1_44981137
hsa-miR-541-5p tgtgggaAATCCTTc AAAGGAUU m7b Disrupted HPTK7_4066_G5883.1_44981137
hsa-miR-6834-3p tgtGGGACATccttc UAUGUCCC m7b Created HPTK7_4066_G5883.1_44981137
hsa-miR-876-5p tgtggGAAATCCttc UGGAUUUC m7b Disrupted HPTK7_4066_G5883.1_44981137

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser