SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001288760
Gene Symbol: ZNF180

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477383G>A COSM1394472 TCGA-A6-5661-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-576-3p ggagctCACATCTTg AAGAUGUG m8a Created HPKMB_4275_G4859.1_44981595

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477310A>C COSM4939597 TCGA-LG-A6GG-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4533 aTCCTTCCgccggag UGGAAGGA m7b Created HPKMB_4274_G4858.1_44981527
hsa-miR-6125 atCCTTCCGCcggag GCGGAAGG m8a Created HPKMB_4274_G4858.1_44981527

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477306G>A COSM4079151 TCGA-HU-A4H4-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3064-5p ttCAGCCAGAgctcg UCUGGCUG m8a Created HPKMB_4274_G4858.1_44981527
hsa-miR-6504-5p ttCAGCCAGAgctcg UCUGGCUG m8a Created HPKMB_4274_G4858.1_44981527
hsa-miR-664a-5p ttcAGCCAGagctcg ACUGGCUA m6b Created HPKMB_4274_G4858.1_44981527

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477304A>G COSM4877307 TCGA-J9-A52C-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1225-3p cagccGGGGCTCgca UGAGCCCC m7b Created HPKMB_4274_G4858.1_44981527
hsa-miR-4707-5p caGCCGGGGCtcgca GCCCCGGC m8a Created HPKMB_4274_G4858.1_44981527

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477299G>A COSM4415759 SNUH_G73_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-18a-5p ggagctcGCACCTTg UAAGGUGC m7b Disrupted HPKMB_4274_G4858.1_44981527
hsa-miR-18b-5p ggagctcGCACCTTg UAAGGUGC m7b Disrupted HPKMB_4274_G4858.1_44981527
hsa-miR-4735-3p ggagctcGCACCTTg AAAGGUGC m7b Disrupted HPKMB_4274_G4858.1_44981527

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477296C>G COSM3823367 TCGA-AC-A23H-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-18a-5p gctcGCACCTTgttt UAAGGUGC m7b Disrupted HPKMB_4274_G4858.1_44981527
hsa-miR-18b-5p gctcGCACCTTgttt UAAGGUGC m7b Disrupted HPKMB_4274_G4858.1_44981527
hsa-miR-4735-3p gctcGCACCTTgttt AAAGGUGC m7b Disrupted HPKMB_4274_G4858.1_44981527
hsa-miR-4761-5p gctcgCACCTTGTtt ACAAGGUG m8a Disrupted HPKMB_4274_G4858.1_44981527
hsa-miR-6068 gCTCGCAGcttgttt CCUGCGAG m7b Created HPKMB_4274_G4858.1_44981527
hsa-miR-624-3p gctcgcACCTTGTtt CACAAGGU m7b Disrupted HPKMB_4274_G4858.1_44981527

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477294T>A COSM1481187 TCGA-A7-A13G-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-18a-5p tcGCACCTTgtttcc UAAGGUGC m7b (m7b->m6b) HPKMB_4274_G4858.1_44981527
hsa-miR-18b-5p tcGCACCTTgtttcc UAAGGUGC m7b (m7b->m6b) HPKMB_4274_G4858.1_44981527
hsa-miR-4735-3p tcGCACCTTgtttcc AAAGGUGC m7b (m7b->m6b) HPKMB_4274_G4858.1_44981527
hsa-miR-4761-5p tcgCACCTTGTttcc ACAAGGUG m8a Disrupted HPKMB_4274_G4858.1_44981527
hsa-miR-494-3p tcgcaccATGTTTCc UGAAACAU m7b Created HPKMB_4274_G4858.1_44981527
hsa-miR-624-3p tcgcACCTTGTttcc CACAAGGU m7b Disrupted HPKMB_4274_G4858.1_44981527

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477144T>G COSM3404360 TCGA-06-6693-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3140-5p aagtcATTCAGGcag ACCUGAAU m7b Disrupted HPKMB_4273_G4857.1_44981342
hsa-miR-4763-5p aagtcatGCAGGCag CGCCUGCC m6b Created HPKMB_4273_G4857.1_44981342
hsa-miR-6076 aaGTCATGCaggcag AGCAUGAC m7b (m6b->m7b) HPKMB_4273_G4857.1_44981342
hsa-miR-6797-3p aaGTCATGCAggcag UGCAUGAC m8a Created HPKMB_4273_G4857.1_44981342
hsa-miR-6894-3p aagtcatGCAGGCAg UUGCCUGC m7b Created HPKMB_4273_G4857.1_44981342

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477129A>C COSM1394470 TCGA-AA-3510-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-595 agctatACACTTatt GAAGUGUG m6b Created HPKMB_4273_G4857.1_44981342

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44477123T>C COSM4581185 CHEWS036 [bone][humerus][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-143-5p aaacttACTGCACat GGUGCAGU m7b Created HPKMB_4273_G4857.1_44981342
Mutation Mutation ID Sample Name Cancer Type
chr19:g.44476883G>A COSM997979 TCGA-BS-A0UV-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr19:g.44476878C>G COSM4604434 2011-2298:2012-322-T [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6501-3p gaGCTCTGagcttgt CCAGAGCA m6b Created HPKMB_4272_G4856.1_44981092
hsa-miR-6761-5p gagCTCTCAGcttgt UCUGAGAG m7b Disrupted HPKMB_4272_G4856.1_44981092
hsa-miR-6854-5p gagctCTGAGCTTgt AAGCUCAG m8a Created HPKMB_4272_G4856.1_44981092

Mutation Mutation ID Sample Name Cancer Type
chr19:g.44476843G>A COSM997978 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4768-5p ctgGAGAGAAaccgt AUUCUCUC m7b Disrupted HPKMB_4271_G4855.1_44981055
hsa-miR-515-5p cTGGAGAAaaaccgt UUCUCCAA m7a Created HPKMB_4271_G4855.1_44981055
hsa-miR-519e-5p cTGGAGAAaaaccgt UUCUCCAA m7a Created HPKMB_4271_G4855.1_44981055
hsa-miR-629-3p ctGGAGAAaaaccgt GUUCUCCC m6b Created HPKMB_4271_G4855.1_44981055
hsa-miR-6809-3p ctggAGAGAAaccgt CUUCUCUU m6b Disrupted HPKMB_4271_G4855.1_44981055
hsa-miR-6833-3p ctgGAGAGAAAccgt UUUCUCUC m8a Disrupted HPKMB_4271_G4855.1_44981055
hsa-miR-6873-3p ctgGAGAGAAaccgt UUCUCUCU m7a Disrupted HPKMB_4271_G4855.1_44981055

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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