SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001282338
Gene Symbol: PLS3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.115649537G>A COSM456555 TCGA-E2-A10E-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3927-5p gttTGATAGGCaggg GCCUAUCA m8a Created HHHNH_2808_PLS3|NM_001136025|exon_CDS|-9.49161297175281|-0.212949384263123
hsa-miR-6747-3p gtttgatAGGCAGGg UCCUGCCU m7b Created HHHNH_2808_PLS3|NM_001136025|exon_CDS|-9.49161297175281|-0.212949384263123

Mutation Mutation ID Sample Name Cancer Type
chrX:g.115647977AGT>AAC COSM372359 LUAD-NYU263 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-22-5p tgtGAAGAACggcaatc AGUUCUUC m7b Created HHHNH_2807_PLS3|NM_001136025|exon_CDS|-9.54197620856507|0.819835845521944
hsa-miR-4252 tgtgaagAGTGGCaatc GGCCACUG m6b Disrupted HHHNH_2807_PLS3|NM_001136025|exon_CDS|-9.54197620856507|0.819835845521944
hsa-miR-6515-3p tgTGAAGAGtggcaatc UCUCUUCA m7b (m7b->m6b) HHHNH_2807_PLS3|NM_001136025|exon_CDS|-9.54197620856507|0.819835845521944
hsa-miR-6777-3p tgtgaAGAGTGGcaatc UCCACUCU m7b Disrupted HHHNH_2807_PLS3|NM_001136025|exon_CDS|-9.54197620856507|0.819835845521944

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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