SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001278677
Gene Symbol: ZNF254

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.24127176T>C COSM1304359 TCGA-G2-A2EF-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-296-3p tctCAACCCTtacta GAGGGUUG m7b Created HPHES_3939_G5227.1_24309989
hsa-miR-219a-1-3p tcTCAACTCTtacta AGAGUUGA m8a Disrupted HPHES_3939_G5227.1_24309989

Mutation Mutation ID Sample Name Cancer Type
chr19:g.24127165C>T COSM4580882 CHEWS001 [bone][NS][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4804-3p ttTTAAGCAactctc UGCUUAAC m7a (m7a->m6a) HPHES_3939_G5227.1_24309989
hsa-miR-4720-3p ttTTAAGCAactctc UGCUUAAG m7a (m7a->m6a) HPHES_3939_G5227.1_24309989
hsa-miR-302a-5p tTTTAAGTaactctc ACUUAAAC m7a Created HPHES_3939_G5227.1_24309989

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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