SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001278317
Gene Symbol: FBXL7

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.15935243TCC>- COSN527751 TCGA-44-7662-01 [lung][left_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-652-3p gGCGCCATcccgaggct AAUGGCGC m7b Disrupted HPTA2_1471_G4251.1_15935359

Mutation Mutation ID Sample Name Cancer Type
chr5:g.15935238C>T COSN2380218 TCGA-50-5933-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-593-5p gaacgGGTGCCatcc AGGCACCA m6b Created HPTA2_1471_G4251.1_15935359
hsa-miR-183-5p gaacggGTGCCATcc UAUGGCAC m7b Created HPTA2_1471_G4251.1_15935359
hsa-miR-566 gaacgGGCGCCatcc GGGCGCCU m6b Disrupted HPTA2_1471_G4251.1_15935359
hsa-miR-652-3p gaacggGCGCCATcc AAUGGCGC m7b Disrupted HPTA2_1471_G4251.1_15935359
hsa-miR-6789-3p gaacGGGCGCCatcc CGGCGCCC m7b Disrupted HPTA2_1471_G4251.1_15935359

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser