SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_001276270
Gene Symbol: MBD4
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.129433874A>G COSM226087 ME024T [NS][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4524a-5p catcGCTGCTATatt AUAGCAGC m8a Created HPSD3_7149_G9597.1_129152705
hsa-miR-4524b-5p catcGCTGCTATatt AUAGCAGC m8a Created HPSD3_7149_G9597.1_129152705
hsa-miR-497-5p catcGCTGCTatatt CAGCAGCA m6b Created HPSD3_7149_G9597.1_129152705
hsa-miR-503-5p catCGCTGCTAtatt UAGCAGCG m8a Created HPSD3_7149_G9597.1_129152705
hsa-miR-646 catcGCTGCTatatt AAGCAGCU m6b Created HPSD3_7149_G9597.1_129152705
hsa-miR-6838-5p catcGCTGCTatatt AAGCAGCA m6b Created HPSD3_7149_G9597.1_129152705
hsa-miR-424-5p catcGCTGCTatatt CAGCAGCA m6b Created HPSD3_7149_G9597.1_129152705

Mutation Mutation ID Sample Name Cancer Type
chr3:g.129433857G>A COSM3587200 TCGA-EE-A185-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-655-5p tcaatcgAACCTCag AGAGGUUA m6b Created HPSD3_7149_G9597.1_129152705
hsa-miR-377-5p tcaatcgAACCTCag AGAGGUUG m6b Created HPSD3_7149_G9597.1_129152705
hsa-miR-6086 tcaatcgAACCTCag GGAGGUUG m6b Created HPSD3_7149_G9597.1_129152705

Mutation Mutation ID Sample Name Cancer Type
chr3:g.129433853T>G COSM4700975 T2418 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7162-3p tcggACCTCAGgttt UCUGAGGU m7b Disrupted HPSD3_7149_G9597.1_129152705
hsa-miR-544b tcggaCCTCAGGTtt ACCUGAGG m8a Disrupted HPSD3_7149_G9597.1_129152705

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser