SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001271707
Gene Symbol: MKRN2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.12582216T>G COSM4954239 CHC805T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8060 gacctCTTCATGcac CCAUGAAG m7b Disrupted HPKMB_5295_G6045.1_12623719
hsa-miR-3678-3p gacCTCTGCAtgcac CUGCAGAG m7b Created HPKMB_5295_G6045.1_12623719
hsa-miR-2467-3p gaCCTCTGCatgcac AGCAGAGG m7b (m6b->m7b) HPKMB_5295_G6045.1_12623719
hsa-miR-4709-3p gacCTCTTCAtgcac UUGAAGAG m7b Disrupted HPKMB_5295_G6045.1_12623719
hsa-miR-6076 gacctctTCATGCac AGCAUGAC m6b Disrupted HPKMB_5295_G6045.1_12623719
Mutation Mutation ID Sample Name Cancer Type
chr3:g.12582206G>T COSM1616843 HCC11T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.12582206G>A COSM3058838 SNU-C2B [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-670-5p agagcTCAGGGACct GUCCCUGA m8a Created HPKMB_5295_G6045.1_12623719
hsa-miR-345-3p agagcTCAGGGacct GCCCUGAA m6b Created HPKMB_5295_G6045.1_12623719
hsa-miR-125a-5p agagCTCAGGGAcct UCCCUGAG m8a Created HPKMB_5295_G6045.1_12623719
hsa-miR-125b-5p agagCTCAGGGAcct UCCCUGAG m8a Created HPKMB_5295_G6045.1_12623719
hsa-miR-4319 agagCTCAGGGAcct UCCCUGAG m8a Created HPKMB_5295_G6045.1_12623719
hsa-miR-4324 agagCTCAGGGacct CCCUGAGA m7a Created HPKMB_5295_G6045.1_12623719
hsa-miR-4732-3p agagcTCAGGGacct GCCCUGAC m6b Created HPKMB_5295_G6045.1_12623719

Mutation Mutation ID Sample Name Cancer Type
chr3:g.12582205C>T COSM176207 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6796-3p cAGAGCTTggggacc GAAGCUCU m7b Created HPKMB_5295_G6045.1_12623719

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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