SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001270401
Gene Symbol: RXRB
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.33197863C>G COSM4006461 B65-Tumor [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4709-5p acatACTGTTGccgg ACAACAGU m7b Created HPTK7_6822_G10174.1_33165628
hsa-miR-144-3p acATACTGTtgccgg UACAGUAU m7b (m6b->m7b) HPTK7_6822_G10174.1_33165628
hsa-miR-196a-3p acatacTGTTGCCGg CGGCAACA m8a Created HPTK7_6822_G10174.1_33165628
hsa-miR-31-5p acatacTCTTGCCgg AGGCAAGA m7b Disrupted HPTK7_6822_G10174.1_33165628
hsa-miR-4709-5p acatACTGTTGccgg ACAACAGU m7b Created HPTK7_6822_G10174.1_33165628
hsa-miR-4709-5p acatACTGTTGccgg ACAACAGU m7b Created HPTK7_6822_G10174.1_33165628
hsa-miR-144-3p acATACTGTtgccgg UACAGUAU m7b (m6b->m7b) HPTK7_6822_G10174.1_33165628
hsa-miR-196a-3p acatacTGTTGCCGg CGGCAACA m8a Created HPTK7_6822_G10174.1_33165628
hsa-miR-31-5p acatacTCTTGCCgg AGGCAAGA m7b Disrupted HPTK7_6822_G10174.1_33165628
hsa-miR-144-3p acATACTGTtgccgg UACAGUAU m7b (m6b->m7b) HPTK7_6822_G10174.1_33165628
hsa-miR-196a-3p acatacTGTTGCCGg CGGCAACA m8a Created HPTK7_6822_G10174.1_33165628
hsa-miR-31-5p acatacTCTTGCCgg AGGCAAGA m7b Disrupted HPTK7_6822_G10174.1_33165628

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser