SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001270401
Gene Symbol: RXRB
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.33198319A>G COSM4778454 RK107_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-324-3p tgcgGGGGCAGaagc ACUGCCCC m7b Created HPKMB_6988_G8001.1_33166119
hsa-miR-3182 tgcggggACAGAAGc GCUUCUGU m7b Disrupted HPKMB_6988_G8001.1_33166119
hsa-miR-1913 tgcgGGGGCAGAagc UCUGCCCC m8a Created HPKMB_6988_G8001.1_33166119
hsa-miR-18a-3p tgcggGGGCAGaagc ACUGCCCU m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-6888-3p tgcgggGACAGAagc AUCUGUCU m6b Disrupted HPKMB_6988_G8001.1_33166119
hsa-miR-6738-3p tgcgggGGCAGAAGc CUUCUGCC m8a Created HPKMB_6988_G8001.1_33166119
hsa-miR-6888-3p tgcgggGACAGAagc AUCUGUCU m6b Disrupted HPKMB_6988_G8001.1_33166119
hsa-miR-6738-3p tgcgggGGCAGAAGc CUUCUGCC m8a Created HPKMB_6988_G8001.1_33166119
hsa-miR-4743-3p tgcgggGACAGAAgc UUUCUGUC m7b Disrupted HPKMB_6988_G8001.1_33166119
hsa-miR-4727-5p tgcgggGGCAGAagc AUCUGCCA m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-4313 tgcGGGGGCagaagc AGCCCCCU m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-6738-3p tgcgggGGCAGAAGc CUUCUGCC m8a Created HPKMB_6988_G8001.1_33166119
hsa-miR-4743-3p tgcgggGACAGAAgc UUUCUGUC m7b Disrupted HPKMB_6988_G8001.1_33166119
hsa-miR-4727-5p tgcgggGGCAGAagc AUCUGCCA m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-4313 tgcGGGGGCagaagc AGCCCCCU m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-324-3p tgcgGGGGCAGaagc ACUGCCCC m7b Created HPKMB_6988_G8001.1_33166119
hsa-miR-3182 tgcggggACAGAAGc GCUUCUGU m7b Disrupted HPKMB_6988_G8001.1_33166119
hsa-miR-1913 tgcgGGGGCAGAagc UCUGCCCC m8a Created HPKMB_6988_G8001.1_33166119
hsa-miR-3182 tgcggggACAGAAGc GCUUCUGU m7b Disrupted HPKMB_6988_G8001.1_33166119
hsa-miR-4743-3p tgcgggGACAGAAgc UUUCUGUC m7b Disrupted HPKMB_6988_G8001.1_33166119
hsa-miR-4727-5p tgcgggGGCAGAagc AUCUGCCA m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-4313 tgcGGGGGCagaagc AGCCCCCU m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-324-3p tgcgGGGGCAGaagc ACUGCCCC m7b Created HPKMB_6988_G8001.1_33166119
hsa-miR-18a-3p tgcggGGGCAGaagc ACUGCCCU m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-1913 tgcgGGGGCAGAagc UCUGCCCC m8a Created HPKMB_6988_G8001.1_33166119
hsa-miR-18a-3p tgcggGGGCAGaagc ACUGCCCU m6b Created HPKMB_6988_G8001.1_33166119
hsa-miR-6888-3p tgcgggGACAGAagc AUCUGUCU m6b Disrupted HPKMB_6988_G8001.1_33166119

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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