SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001253
Gene Symbol: CDC5L
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.44445855C>T COSM3627858 TCGA-EE-A29D-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6784-5p ctattCCCCGGaggc GCCGGGGC m6b Disrupted HPKMB_6680_G7677.1_44413592

Mutation Mutation ID Sample Name Cancer Type
chr6:g.44445854C>T COSM3627857 TCGA-D9-A1JW-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1203 gctattCTCCGGagg CCCGGAGC m6b Created HPKMB_6680_G7677.1_44413592
hsa-miR-6784-5p gctattCCCCGGagg GCCGGGGC m6b Disrupted HPKMB_6680_G7677.1_44413592

Mutation Mutation ID Sample Name Cancer Type
chr6:g.44445812G>A COSM451568 TCGA-BH-A0C7-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-5p gagttacGCACTTTt AAAAGUGC m7b Disrupted HPKMB_6679_G7676.1_44413546
hsa-miR-106b-5p gagttacGCACTTTt UAAAGUGC m7b Disrupted HPKMB_6679_G7676.1_44413546
hsa-miR-17-5p gagttacGCACTTTt CAAAGUGC m7b Disrupted HPKMB_6679_G7676.1_44413546
hsa-miR-20a-5p gagttacGCACTTTt UAAAGUGC m7b Disrupted HPKMB_6679_G7676.1_44413546
hsa-miR-20b-5p gagttacGCACTTTt CAAAGUGC m7b Disrupted HPKMB_6679_G7676.1_44413546
hsa-miR-519d-3p gagttacGCACTTTt CAAAGUGC m7b Disrupted HPKMB_6679_G7676.1_44413546
hsa-miR-526b-3p gagttacGCACTTTt GAAAGUGC m7b Disrupted HPKMB_6679_G7676.1_44413546
hsa-miR-595 gagttaCACACTTtt GAAGUGUG m7b Created HPKMB_6679_G7676.1_44413546
hsa-miR-93-5p gagttacGCACTTTt CAAAGUGC m7b Disrupted HPKMB_6679_G7676.1_44413546

Mutation Mutation ID Sample Name Cancer Type
chr6:g.44445798T>C COSM1079797 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2114-3p aacAGGCTCacttgg CGAGCCUC m6b Disrupted HPKMB_6679_G7676.1_44413546
hsa-miR-2861 aaCAGGCCCacttgg GGGGCCUG m7b (m6b->m7b) HPKMB_6679_G7676.1_44413546

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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