SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001243203
Gene Symbol: RANBP6

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.6013045C>T COSM1732512 LIS07PT2 [soft_tissue][fat][liposarcoma][myxoid-round_cell]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-3p tattTTGCACTcatt CAGUGCAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-130b-3p tattTTGCACTcatt CAGUGCAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-1468-3p tATTTTGCactcatt AGCAAAAU m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-19a-3p tatTTTGCACtcatt UGUGCAAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-19b-3p tatTTTGCACtcatt UGUGCAAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-301a-3p tattTTGCACTcatt CAGUGCAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-301b-3p tattTTGCACTcatt CAGUGCAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-3666 tattTTGCACTcatt CAGUGCAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-4295 tattTTGCACTcatt CAGUGCAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-454-3p tattTTGCACTcatt UAGUGCAA m7b Disrupted HPHES_8468_G11298.1_6013034
hsa-miR-548aw taTTTTGCACtcatt GUGCAAAA m8a Disrupted HPHES_8468_G11298.1_6013034

Mutation Mutation ID Sample Name Cancer Type
chr9:g.6013036T>C COSM1554949 TCGA-50-5930-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5692a ctcATTATTTagtac CAAAUAAU m7b Disrupted HPHES_8468_G11298.1_6013034

Mutation Mutation ID Sample Name Cancer Type
chr9:g.6013031T>C COSM1263797 ESO-1059 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-302a-3p tatttAGCACTTAta UAAGUGCU m8a Created HPHES_8468_G11298.1_6013034
hsa-miR-302b-3p tatttAGCACTTAta UAAGUGCU m8a Created HPHES_8468_G11298.1_6013034
hsa-miR-302c-3p tatttAGCACTTAta UAAGUGCU m8a Created HPHES_8468_G11298.1_6013034
hsa-miR-302d-3p tatttAGCACTTAta UAAGUGCU m8a Created HPHES_8468_G11298.1_6013034
hsa-miR-302e tatttAGCACTTAta UAAGUGCU m8a Created HPHES_8468_G11298.1_6013034
hsa-miR-372-3p tatttAGCACTTata AAAGUGCU m7b Created HPHES_8468_G11298.1_6013034
hsa-miR-373-3p tatttAGCACTTata GAAGUGCU m7b Created HPHES_8468_G11298.1_6013034
hsa-miR-512-3p tatttAGCACTTata AAGUGCUG m7a Created HPHES_8468_G11298.1_6013034
hsa-miR-519a-3p tatttaGCACTTata AAAGUGCA m6b Created HPHES_8468_G11298.1_6013034
hsa-miR-519b-3p tatttaGCACTTata AAAGUGCA m6b Created HPHES_8468_G11298.1_6013034
hsa-miR-519c-3p tatttaGCACTTata AAAGUGCA m6b Created HPHES_8468_G11298.1_6013034
hsa-miR-520a-3p tatttAGCACTTata AAAGUGCU m7b Created HPHES_8468_G11298.1_6013034
hsa-miR-520b tatttAGCACTTata AAAGUGCU m7b Created HPHES_8468_G11298.1_6013034
hsa-miR-520c-3p tatttAGCACTTata AAAGUGCU m7b Created HPHES_8468_G11298.1_6013034
hsa-miR-520d-3p tatttAGCACTTata AAAGUGCU m7b Created HPHES_8468_G11298.1_6013034
hsa-miR-520e tatttAGCACTTata AAAGUGCU m7b Created HPHES_8468_G11298.1_6013034
hsa-miR-520f-3p tatttAGCACTTata AAGUGCUU m7a Created HPHES_8468_G11298.1_6013034

Mutation Mutation ID Sample Name Cancer Type
chr9:g.6013030A>T COSM1109496 TCGA-A5-A0G9-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4511 atttAGTTCTTataa GAAGAACU m7b Created HPHES_8468_G11298.1_6013034
hsa-miR-548b-3p atttaGTTCTTataa CAAGAACC m6b Created HPHES_8468_G11298.1_6013034

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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