SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001242524
Gene Symbol: HLA-DPA1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.33067703T>A COSN9780788 AOCS-058-1-5 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-655-3p aTGTATTATtaatta AUAAUACA m8a (m7a->m8a) HPSD3_8897_G11975.1_33035467
hsa-miR-5692c atgTATTATTaatta AAUAAUAU m7a Created HPSD3_8897_G11975.1_33035467
hsa-miR-5692b atgTATTATTaatta AAUAAUAU m7a Created HPSD3_8897_G11975.1_33035467
hsa-miR-548c-3p atgtATTTTTaatta CAAAAAUC m6b Disrupted HPSD3_8897_G11975.1_33035467
hsa-miR-374c-5p aTGTATTATtaatta AUAAUACA m8a (m7a->m8a) HPSD3_8897_G11975.1_33035467
hsa-miR-369-3p atGTATTATTaatta AAUAAUAC m8a Created HPSD3_8897_G11975.1_33035467

Mutation Mutation ID Sample Name Cancer Type
chr6:g.33067675T>C COSN2159944 RK001_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3686 taaaTTACAGATcta AUCUGUAA m8a Created HPSD3_8897_G11975.1_33035467
hsa-miR-3607-3p taaaTTACAGatcta ACUGUAAA m6b Created HPSD3_8897_G11975.1_33035467
hsa-miR-2054 taaATTACAGatcta CUGUAAUA m7a Created HPSD3_8897_G11975.1_33035467

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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