SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001206836
Gene Symbol: RAB11A
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.65888010CG>C COSN1179114 BN32T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1298-5p cttgtccCGAATGAct UUCAUUCG m7b Disrupted HPKMB_2641_G3000.1_66180351
hsa-miR-1302 ctTGTCCCAAtgact UUGGGACA m8a Created HPKMB_2641_G3000.1_66180351
hsa-miR-3122 cttGTCCCAAtgact GUUGGGAC m7b Created HPKMB_2641_G3000.1_66180351
hsa-miR-3913-5p cttGTCCCAAtgact UUUGGGAC m7b Created HPKMB_2641_G3000.1_66180351
hsa-miR-425-3p cttgTCCCGAatgact AUCGGGAA m6b Disrupted HPKMB_2641_G3000.1_66180351
hsa-miR-4298 ctTGTCCCAatgact CUGGGACA m7b (m6b->m7b) HPKMB_2641_G3000.1_66180351
hsa-miR-616-3p cttgtccCAATGACT AGUCAUUG m8a Created HPKMB_2641_G3000.1_66180351
hsa-miR-6513-5p cttgTCCCAAtgact UUUGGGAU m6b Created HPKMB_2641_G3000.1_66180351
hsa-miR-6771-5p cttgTCCCGAatgact CUCGGGAG m6b Disrupted HPKMB_2641_G3000.1_66180351
hsa-miR-887-5p cttgTCCCAAtgact CUUGGGAG m6b Created HPKMB_2641_G3000.1_66180351

Mutation Mutation ID Sample Name Cancer Type
chr15:g.65869616C>T COSM1478297 TCGA-AQ-A0Y5-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7a-5p cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-let-7b-5p cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-let-7c-5p cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-let-7d-5p cgaCTACCTCTttaa AGAGGUAG m8a Disrupted HPKMB_2638_G2997.1_66161928
hsa-let-7e-5p cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-let-7f-5p cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-let-7g-5p cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-let-7i-5p cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-1276 cgactacCTCTTTAa UAAAGAGC m7a Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-186-5p cgactacTTCTTTaa CAAAGAAU m6b Created HPKMB_2638_G2997.1_66161928
hsa-miR-196a-5p cgACTACCTctttaa UAGGUAGU m7b (m7b->m6b) HPKMB_2638_G2997.1_66161928
hsa-miR-196b-5p cgACTACCTctttaa UAGGUAGU m7b (m7b->m6b) HPKMB_2638_G2997.1_66161928
hsa-miR-3133 cgactacTTCTTTAa UAAAGAAC m7a Created HPKMB_2638_G2997.1_66161928
hsa-miR-4311 cgactacCTCTTTaa GAAAGAGA m6b Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-4458 cgaCTACCTCTttaa AGAGGUAG m8a Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-4500 cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-583 cgactaCCTCTTTaa CAAAGAGG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-98-5p cgaCTACCTCtttaa UGAGGUAG m7b Disrupted HPKMB_2638_G2997.1_66161928

Mutation Mutation ID Sample Name Cancer Type
chr15:g.65869608A>G COSM4056364 TCGA-CG-5721-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106b-3p gacgAGTGCGactac CCGCACUG m6b Created HPKMB_2638_G2997.1_66161928
hsa-miR-106b-3p gacgAGTGCGactac CCGCACUG m6b Created HPKMB_2638_G2997.1_66161928

Mutation Mutation ID Sample Name Cancer Type
chr15:g.65869595C>A COSM3711728 20T [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-138-5p gggCACCAGCgacga AGCUGGUG m7b Created HPKMB_2638_G2997.1_66161928
hsa-miR-3124-5p gggcaCCCGCGAcga UUCGCGGG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-3621 gggcACCCGCGacga CGCGGGUC m7a Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-3656 gggCACCCGCgacga GGCGGGUG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-548q ggGCACCAGCgacga GCUGGUGC m8a Created HPKMB_2638_G2997.1_66161928
hsa-miR-138-5p gggCACCAGCgacga AGCUGGUG m7b Created HPKMB_2638_G2997.1_66161928
hsa-miR-3124-5p gggcaCCCGCGAcga UUCGCGGG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-3621 gggcACCCGCGacga CGCGGGUC m7a Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-3656 gggCACCCGCgacga GGCGGGUG m7b Disrupted HPKMB_2638_G2997.1_66161928
hsa-miR-548q ggGCACCAGCgacga GCUGGUGC m8a Created HPKMB_2638_G2997.1_66161928

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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