SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001206491
Gene Symbol: MAVS
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.3866027C>T COSM3546293 TCGA-FS-A1ZK-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-875-3p ggaagTTCCAGGaga CCUGGAAA m7a Disrupted HPSD3_6137_G8201.1_3846654
hsa-miR-1200 ggaagttTCAGGAGa CUCCUGAG m7a Created HPSD3_6137_G8201.1_3846654
hsa-miR-1343-3p ggaagttCCAGGAGa CUCCUGGG m7a Disrupted HPSD3_6137_G8201.1_3846654
hsa-miR-3140-5p ggaagtTTCAGGaga ACCUGAAU m6b Created HPSD3_6137_G8201.1_3846654
hsa-miR-3653-5p ggaagttTCAGGAGa CCUCCUGA m7b Created HPSD3_6137_G8201.1_3846654
hsa-miR-3690 ggaagtTCCAGGaga ACCUGGAC m6b Disrupted HPSD3_6137_G8201.1_3846654
hsa-miR-378a-5p ggaagttTCAGGAGa CUCCUGAC m7a Created HPSD3_6137_G8201.1_3846654
hsa-miR-4254 ggaagtTCCAGGaga GCCUGGAG m6b Disrupted HPSD3_6137_G8201.1_3846654

Mutation Mutation ID Sample Name Cancer Type
chr20:g.3866021G>C COSM443817 TCGA-A7-A0CE-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4664-3p ccgACCGGAAGttcc CUUCCGGU m8a Disrupted HPSD3_6137_G8201.1_3846654

Mutation Mutation ID Sample Name Cancer Type
chr20:g.3866020G>A COSM4700934 T2225 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7152-3p gccGACCAGAagttc UCUGGUCC m7a Created HPSD3_6137_G8201.1_3846654
hsa-miR-3663-5p gccGACCAGaagttc GCUGGUCU m6b Created HPSD3_6137_G8201.1_3846654
hsa-miR-4664-3p gccgACCGGAAGttc CUUCCGGU m8a Disrupted HPSD3_6137_G8201.1_3846654

Mutation Mutation ID Sample Name Cancer Type
chr20:g.3866008C>T COSM3546292 TCGA-EE-A3J5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4293 ccCAGGCTacaagcc CAGCCUGA m6b Created HPSD3_6137_G8201.1_3846654
hsa-miR-596 ccCAGGCTacaagcc AAGCCUGC m6b Created HPSD3_6137_G8201.1_3846654
hsa-miR-663b cccaGGCCACaagcc GGUGGCCC m6b Disrupted HPSD3_6137_G8201.1_3846654
hsa-miR-6735-3p ccCAGGCCacaagcc AGGCCUGU m6b Disrupted HPSD3_6137_G8201.1_3846654
hsa-miR-7108-5p cccaGGCCACAagcc GUGUGGCC m7b Disrupted HPSD3_6137_G8201.1_3846654

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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