SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001202547
Gene Symbol: SYNJ2BP-COX16

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr14:g.70342681C>T COSM4443265 C658 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5188 tcaaaTCCGATatga AAUCGGAC m6b Disrupted HHHNH_809_COX16|NM_016468|exon_CDS|-7.23246889647068|-0.294617449263431
hsa-miR-361-5p tcaaaTCTGATAtga UUAUCAGA m7b Created HHHNH_809_COX16|NM_016468|exon_CDS|-7.23246889647068|-0.294617449263431
hsa-miR-10b-3p tcaAATCTGatatga ACAGAUUC m6b Created HHHNH_809_COX16|NM_016468|exon_CDS|-7.23246889647068|-0.294617449263431
hsa-miR-3074-3p tcaaatCTGATATga GAUAUCAG m7b Created HHHNH_809_COX16|NM_016468|exon_CDS|-7.23246889647068|-0.294617449263431
hsa-miR-2115-3p tcaaaTCTGATatga CAUCAGAA m6b Created HHHNH_809_COX16|NM_016468|exon_CDS|-7.23246889647068|-0.294617449263431

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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