SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001195308
Gene Symbol: CGGBP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.88055851C>T COSM1048811 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-3p aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-130b-3p aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-1468-3p aactcTTTTGCactt AGCAAAAU m6b Created HPHES_5666_G7538.1_88105000
hsa-miR-19a-3p aactctTTTGCACtt UGUGCAAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-19b-3p aactctTTTGCACtt UGUGCAAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-298 aactCTTCTGCactt AGCAGAAG m7b Disrupted HPHES_5666_G7538.1_88105000
hsa-miR-301a-3p aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-301b-3p aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-3666 aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-4295 aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-454-3p aactcttTTGCACTt UAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-5197-3p aaCTCTTCTgcactt AAGAAGAG m7b (m7b->m6b) HPHES_5666_G7538.1_88105000
hsa-miR-548aj-5p aactCTTTTGCActt UGCAAAAG m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-548aw aactcTTTTGCACtt GUGCAAAA m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-548f-5p aactCTTTTGCActt UGCAAAAG m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-548g-5p aactCTTTTGCActt UGCAAAAG m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-548x-5p aactCTTTTGCActt UGCAAAAG m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-130a-3p aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-130b-3p aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-1468-3p aactcTTTTGCactt AGCAAAAU m6b Created HPHES_5666_G7538.1_88105000
hsa-miR-19a-3p aactctTTTGCACtt UGUGCAAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-19b-3p aactctTTTGCACtt UGUGCAAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-298 aactCTTCTGCactt AGCAGAAG m7b Disrupted HPHES_5666_G7538.1_88105000
hsa-miR-301a-3p aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-301b-3p aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-3666 aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-4295 aactcttTTGCACTt CAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-454-3p aactcttTTGCACTt UAGUGCAA m7b Created HPHES_5666_G7538.1_88105000
hsa-miR-5197-3p aaCTCTTCTgcactt AAGAAGAG m7b (m7b->m6b) HPHES_5666_G7538.1_88105000
hsa-miR-548aj-5p aactCTTTTGCActt UGCAAAAG m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-548aw aactcTTTTGCACtt GUGCAAAA m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-548f-5p aactCTTTTGCActt UGCAAAAG m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-548g-5p aactCTTTTGCActt UGCAAAAG m8a Created HPHES_5666_G7538.1_88105000
hsa-miR-548x-5p aactCTTTTGCActt UGCAAAAG m8a Created HPHES_5666_G7538.1_88105000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.88055843C>A COSM260084 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-3p tgcacttATTGCAat CUGCAAUG m6b Created HPHES_5666_G7538.1_88105000
hsa-miR-4696 tgcactTCTTGCAat UGCAAGAC m7a Disrupted HPHES_5666_G7538.1_88105000
hsa-miR-106a-3p tgcacttATTGCAat CUGCAAUG m6b Created HPHES_5666_G7538.1_88105000
hsa-miR-4696 tgcactTCTTGCAat UGCAAGAC m7a Disrupted HPHES_5666_G7538.1_88105000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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