SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001193489
Gene Symbol: SECISBP2L

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr15:g.48992285A>G COSM1517146 TCGA-86-8054-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-653-5p gcTCAACAaagagca GUGUUGAA m6b Disrupted HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L
hsa-miR-6844 gctcaACAAAGAgca UUCUUUGU m7b Disrupted HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L

Mutation Mutation ID Sample Name Cancer Type
chr15:g.48992257C>T COSM1740196 MINO [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][mantle_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4289 taCACAATGCaaact GCAUUGUG m8a Created HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L
hsa-miR-3680-3p tacacaATGCAAAct UUUUGCAU m7b Created HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L
hsa-miR-33a-5p tacaCAATGCAaact GUGCAUUG m7b Created HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L
hsa-miR-33b-5p tacaCAATGCAaact GUGCAUUG m7b Created HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L
hsa-miR-3680-3p tacacaATGCAAAct UUUUGCAU m7b Created HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L
hsa-miR-4289 taCACAATGCaaact GCAUUGUG m8a Created HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L
hsa-miR-33a-5p tacaCAATGCAaact GUGCAUUG m7b Created HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L
hsa-miR-33b-5p tacaCAATGCAaact GUGCAUUG m7b Created HHSJI_903_Peak41537|7|0.1212|3|NM_014701|SECISBP2L

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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