SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001185075
Gene Symbol: FMR1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.147932575A>G COSM1116462 TCGA-D1-A16Y-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-143-5p tacCTGCACatttca GGUGCAGU m6b Disrupted HPKMA_15434_G17833.1_147014098

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147932564A>T COSM1556911 TCGA-75-6214-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-141-5p ctagatGAAGATacc CAUCUUCC m6b Disrupted HPKMA_15434_G17833.1_147014098
hsa-miR-452-3p ctAGATGAagatacc CUCAUCUG m6b Disrupted HPKMA_15434_G17833.1_147014098

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147930195C>T COSM1756430 B80 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4473 ctgcGCACTAagttg CUAGUGCU m6b Disrupted HPKMA_15433_G17832.1_147011690
hsa-miR-933 cTGCGCACtaagttg UGUGCGCA m7b Disrupted HPKMA_15433_G17832.1_147011690
hsa-miR-4473 ctgcGCACTAagttg CUAGUGCU m6b Disrupted HPKMA_15433_G17832.1_147011690
hsa-miR-933 cTGCGCACtaagttg UGUGCGCA m7b Disrupted HPKMA_15433_G17832.1_147011690

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147930192G>A COSM161113 PD4844a [NS][NS][NS][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-3p aGTCTGCAcactaag CUGCAGAC m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-143-5p agtCTGCACactaag GGUGCAGU m6b Created HPKMA_15433_G17832.1_147011690
hsa-miR-3591-5p agtctgcACACTAAg UUUAGUGU m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-4473 agtctgcGCACTAag CUAGUGCU m6b Disrupted HPKMA_15433_G17832.1_147011690
hsa-miR-648 agtctGCACACTaag AAGUGUGC m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-6767-5p aGTCTGCGcactaag UCGCAGAC m7b Disrupted HPKMA_15433_G17832.1_147011690
hsa-miR-933 agtcTGCGCACtaag UGUGCGCA m7b Disrupted HPKMA_15433_G17832.1_147011690

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147930183G>A COSM3379546 PCSI_0083_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-146a-3p cactTTCAGAGtctg CCUCUGAA m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-4522 cactttCAGAGTCtg UGACUCUG m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-4714-5p cacttTCAGAGTctg AACUCUGA m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-4766-5p caCTTTCAGAgtctg UCUGAAAG m8a Created HPKMA_15433_G17832.1_147011690
hsa-miR-146a-3p cactTTCAGAGtctg CCUCUGAA m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-4522 cactttCAGAGTCtg UGACUCUG m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-4714-5p cacttTCAGAGTctg AACUCUGA m7b Created HPKMA_15433_G17832.1_147011690
hsa-miR-4766-5p caCTTTCAGAgtctg UCUGAAAG m8a Created HPKMA_15433_G17832.1_147011690

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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