SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001185075
Gene Symbol: FMR1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.147937559T>C COSM1116468 TCGA-D1-A101-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3065-3p tgGGTGCTGttttcc UCAGCACC m7b (m7b->m6b) HPHES_9126_G12161.1_147019069
hsa-miR-570-3p tgggtgcTGTTTTCc CGAAAACA m7b Disrupted HPHES_9126_G12161.1_147019069
hsa-miR-6871-3p tGGGTGCTGttttcc CAGCACCC m8a (m8a->m7a) HPHES_9126_G12161.1_147019069

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147932575A>G COSM1116462 TCGA-D1-A16Y-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-143-5p tacCTGCACatttca GGUGCAGU m6b Disrupted HPHES_8969_G11935.1_147014099

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147932564A>T COSM1556911 TCGA-75-6214-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-141-5p ctagatGAAGATacc CAUCUUCC m6b Disrupted HPHES_8969_G11935.1_147014099
hsa-miR-452-3p ctAGATGAagatacc CUCAUCUG m6b Disrupted HPHES_8969_G11935.1_147014099

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147932557C>A COSM367831 LUAD-F00368 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3074-3p tatTGATATagatga GAUAUCAG m6b Created HPHES_8969_G11935.1_147014099
hsa-miR-4777-5p tattgATCTAGAtga UUCUAGAU m7b Disrupted HPHES_8969_G11935.1_147014099
hsa-miR-5694 tatTGATCTagatga CAGAUCAU m6b Disrupted HPHES_8969_G11935.1_147014099

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147928775C>G COSM123202 HN_62421 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-200a-5p aTAAGATGaagctgg CAUCUUAC m7a Created HPHES_8967_G11932.1_147010288
hsa-miR-200b-5p aTAAGATGaagctgg CAUCUUAC m7a Created HPHES_8967_G11932.1_147010288
hsa-miR-452-3p ataAGATGAagctgg CUCAUCUG m6b Created HPHES_8967_G11932.1_147010288

Mutation Mutation ID Sample Name Cancer Type
chrX:g.147928765T>C COSM3973350 TCGA-FG-8188-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3115 gatacttCCCATAag AUAUGGGU m6b Created HPHES_8967_G11932.1_147010288
hsa-miR-3688-3p gatacTTTCCATAag UAUGGAAA m8a Disrupted HPHES_8967_G11932.1_147010288
hsa-miR-3978 gataCTTTCCAtaag GUGGAAAG m7b Disrupted HPHES_8967_G11932.1_147010288
hsa-miR-4747-5p gataCTTCCCataag AGGGAAGG m6b Created HPHES_8967_G11932.1_147010288
hsa-miR-5196-5p gataCTTCCCataag AGGGAAGG m6b Created HPHES_8967_G11932.1_147010288
hsa-miR-6871-5p gatactTCCCATaag CAUGGGAG m6b Created HPHES_8967_G11932.1_147010288
hsa-miR-3115 gatacttCCCATAag AUAUGGGU m6b Created HPHES_8967_G11932.1_147010288
hsa-miR-3688-3p gatacTTTCCATAag UAUGGAAA m8a Disrupted HPHES_8967_G11932.1_147010288
hsa-miR-3978 gataCTTTCCAtaag GUGGAAAG m7b Disrupted HPHES_8967_G11932.1_147010288
hsa-miR-4747-5p gataCTTCCCataag AGGGAAGG m6b Created HPHES_8967_G11932.1_147010288
hsa-miR-5196-5p gataCTTCCCataag AGGGAAGG m6b Created HPHES_8967_G11932.1_147010288
hsa-miR-6871-5p gatactTCCCATaag CAUGGGAG m6b Created HPHES_8967_G11932.1_147010288

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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