SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001184906
Gene Symbol: FBXL20

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.39261532C>T COSM4462250 CSCC-7-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-19a-3p cctacTTTGCACctg UGUGCAAA m7b Created HPTA2_851_G2375.1_37417777
hsa-miR-19b-3p cctacTTTGCACctg UGUGCAAA m7b Created HPTA2_851_G2375.1_37417777
hsa-miR-3973 ccTACTTTGcacctg ACAAAGUA m7b (m6b->m7b) HPTA2_851_G2375.1_37417777
hsa-miR-518a-5p cctaCTTTGCAcctg CUGCAAAG m7b Created HPTA2_851_G2375.1_37417777
hsa-miR-527 cctaCTTTGCAcctg CUGCAAAG m7b Created HPTA2_851_G2375.1_37417777

Mutation Mutation ID Sample Name Cancer Type
chr17:g.39261530C>T COSM1382810 TCGA-G4-6304-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-552-3p tacttcgCACCTGTc AACAGGUG m7b Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-764 tacttcGCACCTGtc GCAGGUGC m7b Disrupted HPTA2_851_G2375.1_37417777

Mutation Mutation ID Sample Name Cancer Type
chr17:g.39261515C>T COSM3516764 TCGA-FS-A4FC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-363-5p acTCCACCCccatca CGGGUGGA m7b (m7b->m6b) HPTA2_851_G2375.1_37417777
hsa-miR-4651 actCCACCCCcatca CGGGGUGG m7b Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-504-3p actcCACTCCCatca GGGAGUGC m7a Created HPTA2_851_G2375.1_37417777
hsa-miR-608 actCCACCCCcatca AGGGGUGG m7b Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-6745 acTCCACCCccatca UGGGUGGA m7b (m7b->m6b) HPTA2_851_G2375.1_37417777
hsa-miR-6751-5p actccACCCCCAtca UUGGGGGU m7b Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-6752-5p actcCACCCCCatca GGGGGGUG m7b Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-6803-5p actccACCCCCAtca CUGGGGGU m7b Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-6835-5p actccACCCCCatca AGGGGGUA m6b Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-6842-5p actcCACCCCCAtca UGGGGGUG m8a Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-6871-5p actccaCTCCCATca CAUGGGAG m7b Created HPTA2_851_G2375.1_37417777
hsa-miR-6880-5p aCTCCACCcccatca UGGUGGAG m7b Disrupted HPTA2_851_G2375.1_37417777
hsa-miR-7110-5p actcCACCCCCAtca UGGGGGUG m8a Disrupted HPTA2_851_G2375.1_37417777

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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