SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001163790
Gene Symbol: PTBP3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.112223966C>T COSM4369701 HCT8 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-29b-3p aaaaTGGTGCTcatt UAGCACCA m7b Created HPSD3_10427_G14146.1_114986254
hsa-miR-339-3p aaaatGGCGCTCAtt UGAGCGCC m8a Disrupted HPSD3_10427_G14146.1_114986254
hsa-miR-3663-3p aaaatGGTGCTCAtt UGAGCACC m8a Created HPSD3_10427_G14146.1_114986254
hsa-miR-767-5p aaaATGGTGCtcatt UGCACCAU m7b Created HPSD3_10427_G14146.1_114986254
hsa-miR-29a-3p aaaaTGGTGCTcatt UAGCACCA m7b Created HPSD3_10427_G14146.1_114986254
hsa-miR-29c-3p aaaaTGGTGCTcatt UAGCACCA m7b Created HPSD3_10427_G14146.1_114986254
hsa-miR-29c-3p aaaaTGGTGCTcatt UAGCACCA m7b Created HPSD3_10427_G14146.1_114986254
hsa-miR-339-3p aaaatGGCGCTCAtt UGAGCGCC m8a Disrupted HPSD3_10427_G14146.1_114986254
hsa-miR-3663-3p aaaatGGTGCTCAtt UGAGCACC m8a Created HPSD3_10427_G14146.1_114986254
hsa-miR-767-5p aaaATGGTGCtcatt UGCACCAU m7b Created HPSD3_10427_G14146.1_114986254
hsa-miR-29b-3p aaaaTGGTGCTcatt UAGCACCA m7b Created HPSD3_10427_G14146.1_114986254
hsa-miR-29a-3p aaaaTGGTGCTcatt UAGCACCA m7b Created HPSD3_10427_G14146.1_114986254

Mutation Mutation ID Sample Name Cancer Type
chr9:g.112223964C>G COSM4845445 TCGA-IR-A3LA-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-339-3p aatGGCGCTCAttca UGAGCGCC m8a Disrupted HPSD3_10427_G14146.1_114986254
hsa-miR-339-3p aatGGCGCTCAttca UGAGCGCC m8a Disrupted HPSD3_10427_G14146.1_114986254

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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