SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001159547
Gene Symbol: BEND4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.42143761C>G COSM3603936 TCGA-DA-A1I2-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-578 gaaACAAGAAacttc CUUCUUGU m7b Created HPTK7_5667_G8496.1_42145784
hsa-miR-8068 gaaacAACAAACttc UGUUUGUU m7b Disrupted HPTK7_5667_G8496.1_42145784

Mutation Mutation ID Sample Name Cancer Type
chr4:g.42143753T>C COSM733438 TCGA-66-2788-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1910-3p aaactTCTGCCTttt GAGGCAGA m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-298 aaaCTTCTGCctttt AGCAGAAG m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-3714 aaacttCTGCCTTtt GAAGGCAG m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-4484 aaacttcCGCCTTTt AAAAGGCG m7b Created HPTK7_5667_G8496.1_42145784
hsa-miR-548an aaacttcTGCCTTTt AAAAGGCA m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-6511a-5p aaactTCTGCCTttt CAGGCAGA m7b Disrupted HPTK7_5667_G8496.1_42145784

Mutation Mutation ID Sample Name Cancer Type
chr4:g.42143752G>T COSM733439 TCGA-21-5787-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1910-3p aactTCTGCCTtttt GAGGCAGA m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-298 aaCTTCTGCcttttt AGCAGAAG m7b (m7b->m6b) HPTK7_5667_G8496.1_42145784
hsa-miR-3185 aaCTTCTTCcttttt AGAAGAAG m7b (m6b->m7b) HPTK7_5667_G8496.1_42145784
hsa-miR-3714 aacttCTGCCTTttt GAAGGCAG m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-548an aacttcTGCCTTTTt AAAAGGCA m8a Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-6511a-5p aactTCTGCCTtttt CAGGCAGA m7b Disrupted HPTK7_5667_G8496.1_42145784

Mutation Mutation ID Sample Name Cancer Type
chr4:g.42143751C>T COSM2847736 KM12 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1910-3p actTCTGCCTttttg GAGGCAGA m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-298 aCTTCTGCctttttg AGCAGAAG m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-3714 acttCTGCCTTtttg GAAGGCAG m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-548an acttcTGCCTTTTtg AAAAGGCA m8a Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-6511a-5p actTCTGCCTttttg CAGGCAGA m7b Disrupted HPTK7_5667_G8496.1_42145784

Mutation Mutation ID Sample Name Cancer Type
chr4:g.42143747T>G COSM259629 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3613-3p ctgccTTTTTGaggg ACAAAAAA m6b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-371b-5p ctgcctTTTTGAGgg ACUCAAAA m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-373-5p ctgcctTTTTGAGgg ACUCAAAA m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-548an cTGCCTTTTtgaggg AAAAGGCA m8a (m8a->m7a) HPTK7_5667_G8496.1_42145784
hsa-miR-616-5p ctgcctTTTTGAGgg ACUCAAAA m7b Disrupted HPTK7_5667_G8496.1_42145784
hsa-miR-7159-5p ctgccTTGTTGAggg UUCAACAA m7b Created HPTK7_5667_G8496.1_42145784

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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