SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001152
Gene Symbol: SLC25A5
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chrX:g.119470449G>A COSM3774020 TCGA-BP-4759-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-941 ttGCCGGGTtgactt CACCCGGC m7b (m7b->m6b) HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734

Mutation Mutation ID Sample Name Cancer Type
chrX:g.119470446C>T COSM3774019 TCGA-BP-4762-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-196a-3p cTGTTGCCGggttga CGGCAACA m8a (m8a->m7a) HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734
hsa-miR-941 ctgttGCCGGGTtga CACCCGGC m7b Disrupted HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734

Mutation Mutation ID Sample Name Cancer Type
chrX:g.119470436C>G COSM4598655 UM-SCC-17B [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-888-3p acTGTCAGTgctgtt GACUGACA m7b (m6b->m7b) HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734
hsa-miR-383-3p actgtcAGTGCTGTt ACAGCACU m8a Created HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734
hsa-miR-3660 aCTGTCAGTgctgtt ACUGACAG m8a (m7a->m8a) HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734
hsa-miR-5190 actGTCACTGctgtt CCAGUGAC m7b Disrupted HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734
hsa-miR-4526 aCTGTCAGtgctgtt GCUGACAG m7b Created HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734
hsa-miR-4519 actgtCACTGCTGtt CAGCAGUG m8a Disrupted HHHNH_3432_SLC25A5|NM_001152|exon_CDS|-6.45776836779835|0.455743076029734

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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