SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001145444
Gene Symbol: SCAF4

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr21:g.31671461G>A COSM1307729 TCGA-FD-A3NA-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3619-5p aCCTGCTGAggctac UCAGCAGG m8a (m8a->m7a) HPKMA_9549_G11048.1_33043759
hsa-miR-374b-3p acCTGCTAAGgctac CUUAGCAG m8a Created HPKMA_9549_G11048.1_33043759
hsa-miR-4291 acCTGCTGAggctac UUCAGCAG m7b (m7b->m6b) HPKMA_9549_G11048.1_33043759
hsa-miR-6165 aCCTGCTGaggctac CAGCAGGA m7a Disrupted HPKMA_9549_G11048.1_33043759
hsa-miR-6510-5p aCCTGCTGaggctac CAGCAGGG m7a Disrupted HPKMA_9549_G11048.1_33043759
hsa-miR-6819-3p acctgctGAGGCTac AAGCCUCU m6b Disrupted HPKMA_9549_G11048.1_33043759
hsa-miR-6877-3p acctgctGAGGCTac CAGCCUCU m6b Disrupted HPKMA_9549_G11048.1_33043759
hsa-miR-761 aCCTGCTGaggctac GCAGCAGG m7b Disrupted HPKMA_9549_G11048.1_33043759
hsa-miR-922 acCTGCTGaggctac GCAGCAGA m6b Disrupted HPKMA_9549_G11048.1_33043759

Mutation Mutation ID Sample Name Cancer Type
chr21:g.31671446G>T COSM1534327 TCGA-64-1679-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1255a CTCATCCTttgaacc AGGAUGAG m8a Created HPKMA_9549_G11048.1_33043759
hsa-miR-191-5p ctcaTCCGTTGaacc CAACGGAA m7a Disrupted HPKMA_9549_G11048.1_33043759
hsa-miR-95-3p ctcatCCGTTGAAcc UUCAACGG m8a Disrupted HPKMA_9549_G11048.1_33043759

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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