SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001145417
Gene Symbol: MSL2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.136152570A>C COSM204725 TCGA-AA-3977-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-129-5p tgctaCAAAAAacta CUUUUUGC m6b Disrupted HPTA1_8233_G11740.1_135871404
hsa-miR-19a-5p tgctacaCAAAACTa AGUUUUGC m7a Created HPTA1_8233_G11740.1_135871404
hsa-miR-19b-1-5p tgctacaCAAAACTa AGUUUUGC m7a Created HPTA1_8233_G11740.1_135871404
hsa-miR-19b-2-5p tgctacaCAAAACTa AGUUUUGC m7a Created HPTA1_8233_G11740.1_135871404
hsa-miR-2113 tgctaCACAAAacta AUUUGUGC m6b Created HPTA1_8233_G11740.1_135871404
hsa-miR-5010-3p tgctACACAAAActa UUUUGUGU m8a Created HPTA1_8233_G11740.1_135871404
hsa-miR-599 tgctACACAAaacta GUUGUGUC m6b Created HPTA1_8233_G11740.1_135871404
hsa-miR-3674 tgCTACAAaaaacta AUUGUAGA m6b Disrupted HPTA1_8233_G11740.1_135871404

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136152559G>T COSM1616959 HCC108 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6872-5p actATGCGAGtatat UCUCGCAU m7b Disrupted HPTA1_8233_G11740.1_135871404
hsa-miR-6814-3p actATGCGAGTatat ACUCGCAU m8a Disrupted HPTA1_8233_G11740.1_135871404
hsa-miR-4661-5p actatGCTAGTatat AACUAGCU m6b Created HPTA1_8233_G11740.1_135871404

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136152559G>A COSM1038847 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6872-5p actATGCGAGtatat UCUCGCAU m7b Disrupted HPTA1_8233_G11740.1_135871404
hsa-miR-6814-3p actATGCGAGTatat ACUCGCAU m8a Disrupted HPTA1_8233_G11740.1_135871404
hsa-miR-153-3p aCTATGCAAgtatat UUGCAUAG m8a (m7a->m8a) HPTA1_8233_G11740.1_135871404

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151559A>G COSM1038839 TCGA-AX-A0J0-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1272 cctagTCATCATttt GAUGAUGA m7b Disrupted HPTA1_8231_G11737.1_135870383

Mutation Mutation ID Sample Name Cancer Type
chr3:g.136151291C>T COSM3123220 8066067 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-5p gcattAATGTGActa UUCACAUU m7b Created HPTA1_8229_G11735.1_135870142
hsa-miR-569 gCATTAACgtgacta AGUUAAUG m7b Disrupted HPTA1_8229_G11735.1_135870142
hsa-miR-323a-3p gcatTAATGTGacta CACAUUAC m7a Created HPTA1_8229_G11735.1_135870142
hsa-miR-23c gcattAATGTGActa AUCACAUU m7b Created HPTA1_8229_G11735.1_135870142
hsa-miR-23b-3p gcattAATGTGActa AUCACAUU m7b Created HPTA1_8229_G11735.1_135870142
hsa-miR-23a-3p gcattAATGTGActa AUCACAUU m7b Created HPTA1_8229_G11735.1_135870142

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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