SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001144939
Gene Symbol: VMO1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.4786015C>T COSM1493938 TCGA-A3-3316-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4276 gacactgCACTGAat CUCAGUGA m6b Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-4295 gacacTGCACTGaat CAGUGCAA m7a Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-3666 gacacTGCACTGaat CAGUGCAA m7a Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-6499-3p gACACTGCactgaat AGCAGUGU m7b Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-152-3p gacacTGCACTGAat UCAGUGCA m8a Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-130a-3p gacacTGCACTGaat CAGUGCAA m7a Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-130b-3p gacacTGCACTGaat CAGUGCAA m7a Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-143-5p gacACTGCACtgaat GGUGCAGU m7b Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-148a-3p gacacTGCACTGAat UCAGUGCA m8a Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-148b-3p gacacTGCACTGAat UCAGUGCA m8a Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-222-5p gacactgTACTGAat CUCAGUAG m6b Created HPTA1_5007_G7071.1_4689315
hsa-miR-301a-3p gacacTGCACTGaat CAGUGCAA m7a Disrupted HPTA1_5007_G7071.1_4689315
hsa-miR-301b-3p gacacTGCACTGaat CAGUGCAA m7a Disrupted HPTA1_5007_G7071.1_4689315

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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