SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001144881
Gene Symbol: PRICKLE1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.42459896T>A COSM431094 TCGA-B6-A0IE-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-302a-3p caccatcAGCACTTc UAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-302b-3p caccatcAGCACTTc UAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-302c-3p caccatcAGCACTTc UAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-302d-3p caccatcAGCACTTc UAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-302e caccatcAGCACTTc UAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-372-3p caccatcAGCACTTc AAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-373-3p caccatcAGCACTTc GAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-4502 cacCATCAGCacttc GCUGAUGA m7a Created HPTA1_3041_G4223.1_42853698
hsa-miR-512-3p caccatCAGCACTTc AAGUGCUG m8a Created HPTA1_3041_G4223.1_42853698
hsa-miR-519a-3p caccatcTGCACTTc AAAGUGCA m7b Disrupted HPTA1_3041_G4223.1_42853698
hsa-miR-519b-3p caccatcTGCACTTc AAAGUGCA m7b Disrupted HPTA1_3041_G4223.1_42853698
hsa-miR-519c-3p caccatcTGCACTTc AAAGUGCA m7b Disrupted HPTA1_3041_G4223.1_42853698
hsa-miR-520a-3p caccatcAGCACTTc AAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-520b caccatcAGCACTTc AAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-520c-3p caccatcAGCACTTc AAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-520d-3p caccatcAGCACTTc AAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-520e caccatcAGCACTTc AAAGUGCU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-8075 cacCATCAGCActtc UGCUGAUG m8a Created HPTA1_3041_G4223.1_42853698

Mutation Mutation ID Sample Name Cancer Type
chr12:g.42459888C>A COSM693117 TCGA-37-3789-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3611 gcaCTTCACAcccct UUGUGAAG m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-3616-5p gCACTTCAcacccct AUGAAGUG m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-4455 gcacttCACACCCct AGGGUGUG m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-4651 gcacttcCCACCCCt CGGGGUGG m7b Disrupted HPTA1_3041_G4223.1_42853698
hsa-miR-4747-5p gcaCTTCCCacccct AGGGAAGG m6b Disrupted HPTA1_3041_G4223.1_42853698
hsa-miR-5196-5p gcaCTTCCCacccct AGGGAAGG m6b Disrupted HPTA1_3041_G4223.1_42853698
hsa-miR-573 gCACTTCAcacccct CUGAAGUG m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-608 gcacttcCCACCCCt AGGGGUGG m7b Disrupted HPTA1_3041_G4223.1_42853698
hsa-miR-6747-5p gcacttcACACCCCt AGGGGUGU m7b Created HPTA1_3041_G4223.1_42853698
hsa-miR-6756-5p gcacttCCCACCCct AGGGUGGG m7b Disrupted HPTA1_3041_G4223.1_42853698
hsa-miR-6766-5p gcacttCCCACCCct CGGGUGGG m7b Disrupted HPTA1_3041_G4223.1_42853698

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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