SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001144013
Gene Symbol: RGPD3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.106425060T>C COSM569146 TCGA-50-5049-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-5p gtaGCACTTTTacat AAAAGUGC m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-106b-5p gtaGCACTTTtacat UAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-17-5p gtaGCACTTTtacat CAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-18a-5p gtaGCACCTTtacat UAAGGUGC m7b Created HPHES_4668_G6211.1_107041531
hsa-miR-18b-5p gtaGCACCTTtacat UAAGGUGC m7b Created HPHES_4668_G6211.1_107041531
hsa-miR-20a-5p gtaGCACTTTtacat UAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-20b-5p gtaGCACTTTtacat CAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-302a-3p gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-302b-3p gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-302c-3p gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-302d-3p gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-302e gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-372-3p gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-373-3p gtAGCACTTttacat GAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-4735-3p gtaGCACCTTTacat AAAGGUGC m8a Created HPHES_4668_G6211.1_107041531
hsa-miR-519d-3p gtaGCACTTTtacat CAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520a-3p gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520b gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520c-3p gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520d-3p gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520e gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-526b-3p gtaGCACTTTtacat GAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-548ah-5p gtagCACTTTTacat AAAAGUGA m7a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-548az-5p gtagCACTTTTacat CAAAAGUG m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-548m gtagcACCTTTacat CAAAGGUA m6b Created HPHES_4668_G6211.1_107041531
hsa-miR-548n gtagcACTTTTacat CAAAAGUA m6b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-548t-5p gtagCACTTTTacat CAAAAGUG m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-93-5p gtaGCACTTTtacat CAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-106a-5p gtaGCACTTTTacat AAAAGUGC m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-106b-5p gtaGCACTTTtacat UAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-17-5p gtaGCACTTTtacat CAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-18a-5p gtaGCACCTTtacat UAAGGUGC m7b Created HPHES_4668_G6211.1_107041531
hsa-miR-18b-5p gtaGCACCTTtacat UAAGGUGC m7b Created HPHES_4668_G6211.1_107041531
hsa-miR-20a-5p gtaGCACTTTtacat UAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-20b-5p gtaGCACTTTtacat CAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-302a-3p gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-302b-3p gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-302c-3p gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-302d-3p gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-302e gtAGCACTTttacat UAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-372-3p gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-373-3p gtAGCACTTttacat GAAGUGCU m7b (m7b->m6b) HPHES_4668_G6211.1_107041531
hsa-miR-4735-3p gtaGCACCTTTacat AAAGGUGC m8a Created HPHES_4668_G6211.1_107041531
hsa-miR-519d-3p gtaGCACTTTtacat CAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520a-3p gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520b gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520c-3p gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520d-3p gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-520e gtAGCACTTTtacat AAAGUGCU m8a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-526b-3p gtaGCACTTTtacat GAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-548ah-5p gtagCACTTTTacat AAAAGUGA m7a Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-548az-5p gtagCACTTTTacat CAAAAGUG m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-548m gtagcACCTTTacat CAAAGGUA m6b Created HPHES_4668_G6211.1_107041531
hsa-miR-548n gtagcACTTTTacat CAAAAGUA m6b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-548t-5p gtagCACTTTTacat CAAAAGUG m7b Disrupted HPHES_4668_G6211.1_107041531
hsa-miR-93-5p gtaGCACTTTtacat CAAAGUGC m7b Disrupted HPHES_4668_G6211.1_107041531

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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