SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001143888
Gene Symbol: BSDC1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376680T>G COSM2078012 HT115 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5680 ccaaaATTTCTacat GAGAAAUG m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-5680 ccaaaATTTCTacat GAGAAAUG m6b Disrupted HPSLC_1198_G1424.1_32842288

Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376671C>T COSM3488170 TCGA-EE-A3AC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1-3p ctACATTCCctgaag UGGAAUGU m7b (m7b->m6b) HPSLC_1198_G1424.1_32842288
hsa-miR-206 ctACATTCCctgaag UGGAAUGU m7b (m7b->m6b) HPSLC_1198_G1424.1_32842288
hsa-miR-211-3p ctacatTCCCTGaag GCAGGGAC m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-3127-5p ctacattCCCTGAag AUCAGGGC m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-4270 ctacatTCCCTGAag UCAGGGAG m7a Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-4441 ctacatTCCCTGaag ACAGGGAG m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-5093 ctaCATTTCCTgaag AGGAAAUG m8a Created HPSLC_1198_G1424.1_32842288
hsa-miR-5584-5p ctacaTTCCCTGaag CAGGGAAA m7a Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-613 ctACATTCCctgaag AGGAAUGU m7b (m7b->m6b) HPSLC_1198_G1424.1_32842288
hsa-miR-6716-5p ctaCATTCCCtgaag UGGGAAUG m7b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-6750-5p ctacaTTCCCTGaag CAGGGAAC m7a Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-6754-5p ctacatTCCCTGaag CCAGGGAG m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-6822-5p ctacaTTCCCTGaag CAGGGAAC m7a Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-873-5p ctacatTTCCTGaag GCAGGAAC m6b Created HPSLC_1198_G1424.1_32842288
hsa-miR-1-3p ctACATTCCctgaag UGGAAUGU m7b (m7b->m6b) HPSLC_1198_G1424.1_32842288
hsa-miR-206 ctACATTCCctgaag UGGAAUGU m7b (m7b->m6b) HPSLC_1198_G1424.1_32842288
hsa-miR-211-3p ctacatTCCCTGaag GCAGGGAC m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-3127-5p ctacattCCCTGAag AUCAGGGC m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-4270 ctacatTCCCTGAag UCAGGGAG m7a Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-4441 ctacatTCCCTGaag ACAGGGAG m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-5093 ctaCATTTCCTgaag AGGAAAUG m8a Created HPSLC_1198_G1424.1_32842288
hsa-miR-5584-5p ctacaTTCCCTGaag CAGGGAAA m7a Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-613 ctACATTCCctgaag AGGAAUGU m7b (m7b->m6b) HPSLC_1198_G1424.1_32842288
hsa-miR-6716-5p ctaCATTCCCtgaag UGGGAAUG m7b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-6750-5p ctacaTTCCCTGaag CAGGGAAC m7a Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-6754-5p ctacatTCCCTGaag CCAGGGAG m6b Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-6822-5p ctacaTTCCCTGaag CAGGGAAC m7a Disrupted HPSLC_1198_G1424.1_32842288
hsa-miR-873-5p ctacatTTCCTGaag GCAGGAAC m6b Created HPSLC_1198_G1424.1_32842288

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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