SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001143888
Gene Symbol: BSDC1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376527G>A COSM1341825 TCGA-G4-6293-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3977 caccTGAAGCACgag GUGCUUCA m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3977 caccTGAAGCACgag GUGCUUCA m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596

Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376518G>C COSM1502459 TCGA-55-8089-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3117-3p cacgAGTCCTAccca AUAGGACU m7b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-8083 cacgAGTCCTaccca CAGGACUU m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3117-3p cacgAGTCCTAccca AUAGGACU m7b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-8083 cacgAGTCCTaccca CAGGACUU m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596

Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376500C>A COSM3966526 TCGA-DU-7007-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1302 accTGTCCCAAaagc UUGGGACA m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-2113 acctgtCACAAAagc AUUUGUGC m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3122 acctGTCCCAAaagc GUUGGGAC m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3913-5p acctGTCCCAAAagc UUUGGGAC m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4298 accTGTCCCAaaagc CUGGGACA m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4504 accTGTCACAaaagc UGUGACAA m7a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-450a-1-3p acctgTCCCAAaagc AUUGGGAA m6b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-542-3p acCTGTCACAaaagc UGUGACAG m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6513-5p acctgTCCCAAAagc UUUGGGAU m7a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6808-3p acctGTCACAaaagc GUGUGACC m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-758-3p acctGTCACAAAagc UUUGUGAC m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-887-5p acctgTCCCAAaagc CUUGGGAG m6b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-1302 accTGTCCCAAaagc UUGGGACA m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-2113 acctgtCACAAAagc AUUUGUGC m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3122 acctGTCCCAAaagc GUUGGGAC m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3913-5p acctGTCCCAAAagc UUUGGGAC m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4298 accTGTCCCAaaagc CUGGGACA m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4504 accTGTCACAaaagc UGUGACAA m7a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-450a-1-3p acctgTCCCAAaagc AUUGGGAA m6b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-542-3p acCTGTCACAaaagc UGUGACAG m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6513-5p acctgTCCCAAAagc UUUGGGAU m7a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6808-3p acctGTCACAaaagc GUGUGACC m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-758-3p acctGTCACAAAagc UUUGUGAC m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-887-5p acctgTCCCAAaagc CUUGGGAG m6b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596

Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376498A>C COSM3984977 TCGA-DZ-6134-01 [kidney][NS][carcinoma][papillary_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1302 cTGTCCCAAaagctg UUGGGACA m8a (m8a->m7a) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-208a-5p ctgtcccAAAAGCTg GAGCUUUU m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-208b-5p ctgtcccAAAAGCTg AAGCUUUU m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-2110 ctgTCCCCAAagctg UUGGGGAA m7a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3122 ctGTCCCAAaagctg GUUGGGAC m7b (m7b->m6b) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3140-3p ctgtccCAAAAGCTg AGCUUUUG m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3144-5p ctGTCCCCaaagctg AGGGGACC m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3150a-3p ctgTCCCCAaagctg CUGGGGAG m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3191-3p ctGTCCCCAaagctg UGGGGACG m7a (m6a->m7a) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3913-5p ctGTCCCAAAagctg UUUGGGAC m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4260 ctgtCCCCAAagctg CUUGGGGC m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4298 cTGTCCCAaaagctg CUGGGACA m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-450a-1-3p ctgTCCCAAaagctg AUUGGGAA m6b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-450a-2-3p ctgTCCCCAAagctg AUUGGGGA m7b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-5572 ctgtCCCCAAagctg GUUGGGGU m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6513-5p ctgTCCCAAAagctg UUUGGGAU m7a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6763-5p ctgTCCCCAaagctg CUGGGGAG m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6810-5p ctGTCCCCAaagctg AUGGGGAC m7b (m6b->m7b) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6857-5p ctgTCCCCAAagctg UUGGGGAU m7a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-887-5p ctgTCCCAAaagctg CUUGGGAG m6b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-1302 cTGTCCCAAaagctg UUGGGACA m8a (m8a->m7a) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-208a-5p ctgtcccAAAAGCTg GAGCUUUU m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-208b-5p ctgtcccAAAAGCTg AAGCUUUU m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-2110 ctgTCCCCAAagctg UUGGGGAA m7a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3122 ctGTCCCAAaagctg GUUGGGAC m7b (m7b->m6b) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3140-3p ctgtccCAAAAGCTg AGCUUUUG m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3144-5p ctGTCCCCaaagctg AGGGGACC m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3150a-3p ctgTCCCCAaagctg CUGGGGAG m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3191-3p ctGTCCCCAaagctg UGGGGACG m7a (m6a->m7a) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-3913-5p ctGTCCCAAAagctg UUUGGGAC m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4260 ctgtCCCCAAagctg CUUGGGGC m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4298 cTGTCCCAaaagctg CUGGGACA m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-450a-1-3p ctgTCCCAAaagctg AUUGGGAA m6b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-450a-2-3p ctgTCCCCAAagctg AUUGGGGA m7b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-5572 ctgtCCCCAAagctg GUUGGGGU m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6513-5p ctgTCCCAAAagctg UUUGGGAU m7a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6763-5p ctgTCCCCAaagctg CUGGGGAG m6b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6810-5p ctGTCCCCAaagctg AUGGGGAC m7b (m6b->m7b) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6857-5p ctgTCCCCAAagctg UUGGGGAU m7a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-887-5p ctgTCCCAAaagctg CUUGGGAG m6b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596

Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376464C>T COSM3804963 TCGA-AN-A046-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1291 aaCAGGGCCtggctg UGGCCCUG m7b (m7b->m6b) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-146b-3p aACAGGGCctggctg UGCCCUGU m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4725-5p aaCAGGGTCTggctg AGACCCUG m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4755-3p aacaggGCCTGGCTg AGCCAGGC m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-504-5p aaCAGGGTCTggctg AGACCCUG m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6775-3p aaCAGGGCCTggctg AGGCCCUG m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-1291 aaCAGGGCCtggctg UGGCCCUG m7b (m7b->m6b) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-146b-3p aACAGGGCctggctg UGCCCUGU m7b Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4725-5p aaCAGGGTCTggctg AGACCCUG m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4755-3p aacaggGCCTGGCTg AGCCAGGC m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-504-5p aaCAGGGTCTggctg AGACCCUG m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-6775-3p aaCAGGGCCTggctg AGGCCCUG m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596

Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376462T>A COSM464442 TCGA-B8-5158-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1291 CAGGGCCAggctgtg UGGCCCUG m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-328-3p cAGGGCCAGgctgtg CUGGCCCU m8a (m7a->m8a) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4755-3p caggGCCTGGCTgtg AGCCAGGC m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-1291 CAGGGCCAggctgtg UGGCCCUG m8a Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-328-3p cAGGGCCAGgctgtg CUGGCCCU m8a (m7a->m8a) HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-4755-3p caggGCCTGGCTgtg AGCCAGGC m8a Disrupted HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596

Mutation Mutation ID Sample Name Cancer Type
chr1:g.32376457G>A COSM3705779 HCC111T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103b cctGGCTATGgatgt UCAUAGCC m7b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596
hsa-miR-103b cctGGCTATGgatgt UCAUAGCC m7b Created HHHNH_388_BSDC1|NM_001143888|exon_CDS|-6.21546103138719|-1.27513578458596

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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